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| [wiki:Self:FreeSurferWiki top] | [[FreeSurferWiki|top]] = Uploading Data = If you have been asked to send the !FreeSurfer team a file, you can either send it via FTP or File Drop. Instructions for both are below. When sending us data, please keep in mind any restrictions dictated by the IRB protocol governing this data. By default, mgz files (the !FreeSurfer file format) have been stripped of any identifying information. However, you may want to consider defacing your data before you send it. |
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| Use '''ftp surfer.nmr.mgh.harvard.edu'''. Login as '''anonymous''' and use your email addresses as the password. | Use '''ftp surfer.nmr.mgh.harvard.edu'''. Login as '''anonymous''' and use your email address as the password. |
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| If you are getting files, then | If you are '''getting''' files, then |
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| ftp> cd transfer/outgoing | ftp> cd transfer/outgoing ftp> get filename.txt |
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| If you are putting files, then | If you are '''putting files''', then |
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| ftp> cd transfer/incoming | ftp> cd transfer/incoming ftp> put filename.txt |
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| ftp> cd pub/dist | ftp> cd pub/dist/freesurfer |
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| For those inside NMR center, go to '''/space/outgoing''' and put files in its subdirectory. You can get user transfered files from '''/space/incoming'''. It takes 5 minutes or so to actually see the files there after the transfer. | For those inside NMR center, go to '''/cluster/outgoing''' and put files in its subdirectory. You can get user transfered files from '''/cluster/incoming'''. It takes 5 minutes or so to actually see the files there after the transfer. |
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| = Email File Drop = An alternative to ftp is the [[https://gate.nmr.mgh.harvard.edu/filedrop2/|Martinos Center File Drop]]. There is a 100MB limit (or 500MB for a group of files) so you will want to compress the file(s) when necessary. |
Uploading Data
If you have been asked to send the FreeSurfer team a file, you can either send it via FTP or File Drop. Instructions for both are below.
When sending us data, please keep in mind any restrictions dictated by the IRB protocol governing this data. By default, mgz files (the FreeSurfer file format) have been stripped of any identifying information. However, you may want to consider defacing your data before you send it.
FTP File Exchange
An FTP server is available to which, under special circumstances, files may be uploaded. Also, sometimes special distributions or bug fixes are posted to the server for user download.
Use ftp surfer.nmr.mgh.harvard.edu. Login as anonymous and use your email address as the password.
Example login:
$ ftp surfer.nmr.mgh.harvard.edu Connected to surfer.nmr.mgh.harvard.edu (132.183.202.158). 220 surfer.nmr.mgh.harvard.edu FTP server (Version wu-2.6.2-15.7x.legacy) ready. Name (surfer.nmr.mgh.harvard.edu:fsurfer): anonymous 331 Guest login ok, send your complete e-mail address as password. Password: 230 Guest login ok, access restrictions apply. Remote system type is UNIX. Using binary mode to transfer files. ftp>
If you are getting files, then
ftp> cd transfer/outgoing ftp> get filename.txt
If you are putting files, then
ftp> cd transfer/incoming ftp> put filename.txt
If you want the directory containing the public distributions of FreeSurfer:
ftp> cd pub/dist/freesurfer
The dir command will show directory contents. The get command will download a file to your machine.
For those inside NMR center, go to /cluster/outgoing and put files in its subdirectory. You can get user transfered files from /cluster/incoming. It takes 5 minutes or so to actually see the files there after the transfer.
Email File Drop
An alternative to ftp is the Martinos Center File Drop. There is a 100MB limit (or 500MB for a group of files) so you will want to compress the file(s) when necessary.