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Editor: AndrewHoopes
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= GSL Replacement =

GPL is bad and we're going to replace GSL.

Stub library located at: /usr/pubsw/packages/gsl/stub/include/

== Files with GSL ==
 * randomfields.h
 * mri_cht2p.c
 * mri_diff.c -- seems to only include gsl
 * mri_glmfit.c -- seems to only include gsl
 * mri_mcsim.c -- seems to only include gsl
 * mri_stats2reg.c -- seems to only include gsl
 * optseq2.c
 * fmriutils.c
 * fsglm.c
 * matrix.c -- lots of matrix functionality that we can replace with vxl
 * randomfields.c
 * sig.c
 * volcluster.c

== GSL Types and Functions Used ==
 * gsl_matrix
  * optseq2.c::AR1WhitenMatrix
  * matrix.c::MatrixToGSL
  * matrix.c::MatrixFromGSL
  * matrix.c::MatrixSVDPseudoInverse
 * gsl_matrix_alloc
  * matrix.c::MatrixToGSL
  * matrix.c::MatrixSVDPseudoInverse
 * gsl_matrix_calloc
  * optseq2.c::AR1WhitenMatrix
 * gsl_matrix_free
  * optseq2.c::AR1WhitenMatrix
  * matrix.c::MatrixSVDPseudoInverse
 * gsl_matrix_get
  * optseq2.c::AR1WhitenMatrix
  * matrix.c::MatrixFromGSL
 * gsl_matrix_set
  * optseq2.c::AR1WhitenMatrix
  * matrix.c::MatrixFromGSL
 * gsl_vector
  * matrix.c::MatrixSVDPseudoInverse
  * matrix.c::VectorFromGSL
 * gsl_vector_alloc
  * matrix.c::MatrixSVDPseudoInverse
 * gsl_vector_free
  * matrix.c::MatrixSVDPseudoInverse
 * gsl_vector_get
  * matrix.c::VectorFromGSL
 * gsl_vector_set -- not used
 * gsl_cdf_fdist_Q
  * fmriutils.c::fMRIsigF
  * fsglm.c::GLMtest
  * randomfields.c::RFstat2PVal
 * gsl_cdf_flat_Q
  * randomfields.c::RFstat2PVal
 * gsl_cdf_gaussian_Q
  * randomfields.c::RFstat2PVal
 * gsl_cdf_tdist_Q
  * randomfields.c::RFstat2PVal
  * sig.c::sigt
 * gsl_cdf_chisq_Q
  * randomfields.c::RFstat2PVal
 * gsl_cdf_flat_Qinv
  * randomfields.c::RFp2StatVal
 * gsl_cdf_gaussian_Qinv
  * randomfields.c::RFp2StatVal
 * gsl_cdf_tdist_Qinv
  * randomfields.c::RFp2StatVal
 * gsl_cdf_chisq_Qinv
  * randomfields.c::RFp2StatVal
 * gsl_linalg_SV_decomp
  * matrix.c::MatrixSVDPseudoInverse
 * gsl_linalg_cholesky_decomp
  * optseq2.c::AR1WhitenMatrix
 * gsl_rng_type
  * randomfields.h::RANDOM_FIELD_SPEC, RFS
  * randomfields.h::RFspecInit
  * randomfields.c::RFspecInit
 * gsl_rng_ranlux389
  * randomfields.c::RFspecInit
 * gsl_rng
  * randomfields.h::RANDOM_FIELD_SPEC, RFS
 * gsl_rng_alloc
  * randomfields.c::RFspecInit
 * gsl_rng_free
  * randomfields.c::RFspecFree
 * gsl_rng_set
  * randomfields.c::RFspecSetSeed
 * gsl_ran_flat
  * randomfields.c::RFdrawVal
 * gsl_ran_gaussian
  * randomfields.c::RFdrawVal
 * gsl_ran_fdist
  * randomfields.c::RFdrawVal
 * gsl_ran_tdist
  * randomfields.c::RFdrawVal
 * gsl_ran_chisq
  * randomfields.c::RFdrawVal
 * gsl_ran_binomial_pdf
  * mri_cht2p.c::main
  * volcluster.c::CSDpvalClustSize