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Describe GrahamWideman here. = GrahamWideman pages =
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Just a test. == Useful pages ==
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Emphasis:
''italics''; '''bold'''; '''''bold italics'''''; ''mixed '''bold''' and italics''; ---- horizontal rule.
Headings:
= Title 1 =; == Title 2 ==; === Title 3 ===; ==== Title 4 ====; ===== Title 5 =====.
Lists:
space and one of * bullets; 1., a., A., i., I. numbered items; 1.#n start numbering at n; space alone indents.
Links:
JoinCapitalizedWords; ["brackets and double quotes"]; url; [url]; [url label].
Tables:
|| cell text |||| cell text spanning two columns ||; no trailing white space allowed after tables or titles.
----
CategoryCategory
||'''Link'''||'''Description'''||
||<^>ReconAllFilesVsSteps||Cross-reference table showing files read and written by each step in recon-all||
||<^>LabelsClutsAnnotationFiles||Article on '''labels''', '''colortables''' and '''annotations''' ||
||<^>RegTemplateParcAtlas ||Overview: [[BR]] --Creating and using '''"tif" templates''' for spherical registration of surfaces[[BR]] --Creating and using '''GCA atlas files''' for parcellation||
||<^>...RegTemplateParcAtlas/TemplateCreate||Creating a '''template''' for spherical registration (mris_make_template)||
||<^>...RegTemplateParcAtlas/TemplateUse||Using a '''template''' (mris_register)||
||<^>...RegTemplateParcAtlas/AtlasCreate||Creating an '''atlas''' for parcellation (mris_ca_train) ||
||<^>...RegTemplateParcAtlas/AtlasUse||Parcellation by applying an '''atlas''' (mris_ca_label)||
||<^> || ||
||<^>QaImageScripts||Sample scripts to produce "screencaps" en masse from tksurfer and tkmedit for QA ||
|| || ||


||'''Commands'''||(... for which I wrote some documentation) ||
||["mris_curvature_stats"] || ||
||["mris_label2annot"] || ||
||["mri_annotation2label"]|| ||
||["mris_make_template"]|| ||
||["mri_make_template"]|| ||
|| || ||

== Test Pages ==

 * GrahamWideman
 * GrahamWideman/MoinEditorBackup
 * GrahamWidemanTest01
 * GrahamWidemanTest02
 * GrWiAccessControlTest
 * GrWiTestNewPage
 

GrahamWideman pages

Useful pages

Link

Description

ReconAllFilesVsSteps

Cross-reference table showing files read and written by each step in recon-all

LabelsClutsAnnotationFiles

Article on labels, colortables and annotations

RegTemplateParcAtlas

Overview: BR --Creating and using "tif" templates for spherical registration of surfacesBR --Creating and using GCA atlas files for parcellation

...RegTemplateParcAtlas/TemplateCreate

Creating a template for spherical registration (mris_make_template)

...RegTemplateParcAtlas/TemplateUse

Using a template (mris_register)

...RegTemplateParcAtlas/AtlasCreate

Creating an atlas for parcellation (mris_ca_train)

...RegTemplateParcAtlas/AtlasUse

Parcellation by applying an atlas (mris_ca_label)

QaImageScripts

Sample scripts to produce "screencaps" en masse from tksurfer and tkmedit for QA

Commands

(... for which I wrote some documentation)

["mris_curvature_stats"]

["mris_label2annot"]

["mri_annotation2label"]

["mris_make_template"]

["mri_make_template"]

Test Pages

GrahamWideman (last edited 2013-10-10 03:40:06 by GrahamWideman)