Differences between revisions 1 and 42 (spanning 41 versions)

GrahamWideman pages

Useful pages

Link	Description
Concepts
ReconAllFilesVsSteps	Cross-reference table showing files read and written by each step in recon-all
LabelsClutsAnnotationFiles	Article on labels, colortables and annotations
RegTemplateParcAtlas	Overview: BR --Creating and using "tif" templates for spherical registration of surfacesBR --Creating and using GCA atlas files for parcellation
TemplateTifImageFiles	Discussion of the contents and format of the so-called "Image" file format used to store FreeSurfer surface-registration template data.

Scripts
QaImageScripts	Sample scripts to produce "screencaps" en masse from tksurfer and tkmedit for QA

Commands	(... for which I wrote some documentation)
["mris_curvature_stats"]	Curvature-related statistics
["mris_label2annot"]	Combine label files plus colortable into an annotation file
["mri_annotation2label"]	Extract label file from annotation file
["mris_make_template"]	Use data from multiple subjects to create a surface registration template file
["mri_make_template"]	Use data from multiple subjects to create a volume registration template
["mris_register"]	For one subject, register to a registration template (usually resulting in ?h.sphere.reg)
["mrisp_paint"]	"Paint" data from a template file "onto a given surface". Allows viewing data from a template file.

-  ⇤ ← Revision 1 as of 2006-06-03 04:28:50 → 
  Size: 623
  Editor: GrahamWideman
  Comment:
+   ← Revision 42 as of 2008-01-24 04:25:53 → ⇥
  Size: 1824
  Editor: GrahamWideman
  Comment:
-Deletions are marked like this.
+Additions are marked like this.
 Line 1:
-Describe GrahamWideman here.
+= GrahamWideman pages =
 Line 3:
-Just a test.
+== Useful pages ==
 Line 5:
-Emphasis: 
''italics''; '''bold'''; '''''bold italics'''''; ''mixed '''bold''' and italics''; ---- horizontal rule. 
Headings: 
= Title 1 =; == Title 2 ==; === Title 3 ===; ==== Title 4 ====; ===== Title 5 =====. 
Lists: 
space and one of * bullets; 1., a., A., i., I. numbered items; 1.#n start numbering at n; space alone indents. 
Links: 
JoinCapitalizedWords; ["brackets and double quotes"]; url; [url]; [url label]. 
Tables: 
|| cell text |||| cell text spanning two columns ||; no trailing white space allowed after tables or titles.
----
CategoryCategory
+||<#D0D0D0>'''Link'''||<#D0D0D0>'''Description'''||
||'''Concepts'''|| ||
||<^>ReconAllFilesVsSteps||Cross-reference table showing files read and written by each step in recon-all||
||<^>LabelsClutsAnnotationFiles||Article on '''labels''', '''colortables''' and '''annotations''' ||
||<^>RegTemplateParcAtlas ||Overview: [[BR]] --Creating and using '''"tif" templates''' for spherical registration of surfaces[[BR]] --Creating and using '''GCA atlas files''' for parcellation||
||<^>TemplateTifImageFiles||Discussion of the contents and format of the so-called "Image" file format used to store  !FreeSurfer surface-registration template data.||
|| || ||
||<#D0D0D0>'''Scripts'''||<#D0D0D0> ||
||<^>QaImageScripts||Sample scripts to produce "screencaps" en masse from tksurfer and tkmedit for QA ||
|| || ||
||<#D0D0D0>'''Commands'''||<#D0D0D0>(... for which I wrote some documentation) ||
||<^>["mris_curvature_stats"] ||Curvature-related statistics ||
||<^>["mris_label2annot"] ||Combine label files plus colortable into an annotation file ||
||<^>["mri_annotation2label"]||Extract label file from annotation file ||
||<^>["mris_make_template"]||Use data from multiple subjects to create a surface registration template file ||
||<^>["mri_make_template"]||Use data from multiple subjects to create a volume registration template ||
||<^>["mris_register"]||For one subject, register to a registration template (usually resulting in ?h.sphere.reg) ||
||<^>["mrisp_paint"]||"Paint" data from a template file "onto a given surface". Allows viewing data from a template file.||
|| || ||

== Test Pages ==

 * GrahamWideman
 * GrahamWideman/MoinEditorBackup
 * GrahamWidemanTest01
 * GrahamWidemanTest02
 * GrWiAccessControlTest
 * GrWiTestNewPage