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| ||ReconAllFilesVsSteps||Cross-reference table showing files read and written by each step in recon-all|| ||LabelsClutsAnnotationFiles||Article on labels, colortables and annotations || ||QaImageScripts||Sample scripts to produce "screencaps" en masse from tksurfer and tkmedit for QA || |
||<^>ReconAllFilesVsSteps||Cross-reference table showing files read and written by each step in recon-all|| ||<^>LabelsClutsAnnotationFiles||Article on '''labels''', '''colortables''' and '''annotations''' || ||<^>RegTemplateParcAtlas ||Overview: [[BR]] --Creating and using '''"tif" templates''' for spherical registration of surfaces[[BR]] --Creating and using '''GCA atlas files''' for parcellation|| ||<^>...RegTemplateParcAtlas/TemplateCreate||Creating a '''template''' for spherical registration (mris_make_template)|| ||<^>...RegTemplateParcAtlas/TemplateUse||Using a '''template''' (mris_register)|| ||<^>...RegTemplateParcAtlas/AtlasCreate||Creating an '''atlas''' for parcellation (mris_ca_train) || ||<^>...RegTemplateParcAtlas/AtlasUse||Parcellation by applying an '''atlas''' (mris_ca_label)|| ||<^> || || ||<^>QaImageScripts||Sample scripts to produce "screencaps" en masse from tksurfer and tkmedit for QA || |
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| ||'''Commands'''|| || | ||'''Commands'''||(... for which I wrote some documentation) || |
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| ||["mris_make_template"]|| || ||["mri_make_template"]|| || ||["mris_register"]|| || |
GrahamWideman pages
Useful pages
Link |
Description |
Cross-reference table showing files read and written by each step in recon-all |
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Article on labels, colortables and annotations |
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Overview: BR --Creating and using "tif" templates for spherical registration of surfacesBR --Creating and using GCA atlas files for parcellation |
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Creating a template for spherical registration (mris_make_template) |
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Using a template (mris_register) |
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Creating an atlas for parcellation (mris_ca_train) |
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Parcellation by applying an atlas (mris_ca_label) |
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Sample scripts to produce "screencaps" en masse from tksurfer and tkmedit for QA |
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Commands |
(... for which I wrote some documentation) |
["mris_curvature_stats"] |
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["mris_label2annot"] |
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["mri_annotation2label"] |
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["mris_make_template"] |
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["mri_make_template"] |
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["mris_register"] |
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