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| ||ReconAllFilesVsSteps||Cross-reference table showing files read and written by each step in recon-all|| ||LabelsClutsAnnotationFiles||Article on labels, colortables and annotations || ||QaImageScripts||Sample scripts to produce "screencaps" en masse from tksurfer and tkmedit for QA || |
||<^>ReconAllFilesVsSteps||Cross-reference table showing files read and written by each step in recon-all|| ||<^>LabelsClutsAnnotationFiles||Article on '''labels''', '''colortables''' and '''annotations''' || ||<^>RegTemplateParcAtlas ||Overview: [[BR]] --Creating and using '''"tif" templates''' for spherical registration of surfaces[[BR]] --Creating and using '''GCA atlas files''' for parcellation|| ||<^>QaImageScripts||Sample scripts to produce "screencaps" en masse from tksurfer and tkmedit for QA || |
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| ||["mris_make_template"]|| || ||["mri_make_template"]|| || ||["mris_register"]|| || |
GrahamWideman pages
Useful pages
Link |
Description |
Cross-reference table showing files read and written by each step in recon-all |
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Article on labels, colortables and annotations |
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Overview: BR --Creating and using "tif" templates for spherical registration of surfacesBR --Creating and using GCA atlas files for parcellation |
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Sample scripts to produce "screencaps" en masse from tksurfer and tkmedit for QA |
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Commands |
(... for which I wrote some documentation) |
["mris_curvature_stats"] |
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["mris_label2annot"] |
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["mri_annotation2label"] |
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["mris_make_template"] |
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["mri_make_template"] |
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["mris_register"] |
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