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| ||<^>RegTemplateParcAtlas||Creating and using "tif" templates for spherical registration of surfaces and GCA atlas files for parcellation|| | ||<^>RegTemplateParcAtlas||Overview:[[BR]]--Creating and using "tif" templates for spherical registration of surfaces[[BR]]--Creating and using GCA atlas files for parcellation|| |
GrahamWideman pages
Useful pages
Link |
Description |
Cross-reference table showing files read and written by each step in recon-all |
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Article on labels, colortables and annotations |
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Overview:[[BR]]--Creating and using "tif" templates for spherical registration of surfacesBR--Creating and using GCA atlas files for parcellation |
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Creating a template for spherical registration (mris_make_template) |
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Using a template (mris_register) |
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Creating an atlas for parcellation (mris_ca_train) |
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Parcellation by applying an atlas (mris_ca_label) |
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Sample scripts to produce "screencaps" en masse from tksurfer and tkmedit for QA |
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Commands |
(... for which I wrote some documentation) |
["mris_curvature_stats"] |
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["mris_label2annot"] |
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["mri_annotation2label"] |
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["mris_make_template"] |
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["mri_make_template"] |
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