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||<^>LabelsClutsAnnotationFiles||Article on labels, colortables and annotations ||
||<^>RegTemplateParcAtlas ||Overview: [[BR]] --Creating and using "tif" templates for spherical registration of surfaces[[BR]] --Creating and using GCA atlas files for parcellation||
||<^>...RegTemplateParcAtlas/TemplateCreate||Creating a template for spherical registration (mris_make_template)||
||<^>...RegTemplateParcAtlas/TemplateUse||Using a template (mris_register)||
||<^>...RegTemplateParcAtlas/AtlasCreate||Creating an atlas for parcellation (mris_ca_train) ||
||<^>...RegTemplateParcAtlas/AtlasUse||Parcellation by applying an atlas (mris_ca_label)||
||<^>LabelsClutsAnnotationFiles||Article on '''labels''', '''colortables''' and '''annotations''' ||
||<^>RegTemplateParcAtlas ||Overview: [[BR]] --Creating and using '''"tif" templates''' for spherical registration of surfaces[[BR]] --Creating and using '''GCA atlas files''' for parcellation||
||<^>...RegTemplateParcAtlas/TemplateCreate||Creating a '''template''' for spherical registration (mris_make_template)||
||<^>...RegTemplateParcAtlas/TemplateUse||Using a '''template''' (mris_register)||
||<^>...RegTemplateParcAtlas/AtlasCreate||Creating an '''atlas''' for parcellation (mris_ca_train) ||
||<^>...RegTemplateParcAtlas/AtlasUse||Parcellation by applying an '''atlas''' (mris_ca_label)||

GrahamWideman pages

Useful pages

Link

Description

ReconAllFilesVsSteps

Cross-reference table showing files read and written by each step in recon-all

LabelsClutsAnnotationFiles

Article on labels, colortables and annotations

RegTemplateParcAtlas

Overview: BR --Creating and using "tif" templates for spherical registration of surfacesBR --Creating and using GCA atlas files for parcellation

...RegTemplateParcAtlas/TemplateCreate

Creating a template for spherical registration (mris_make_template)

...RegTemplateParcAtlas/TemplateUse

Using a template (mris_register)

...RegTemplateParcAtlas/AtlasCreate

Creating an atlas for parcellation (mris_ca_train)

...RegTemplateParcAtlas/AtlasUse

Parcellation by applying an atlas (mris_ca_label)

QaImageScripts

Sample scripts to produce "screencaps" en masse from tksurfer and tkmedit for QA

Commands

(... for which I wrote some documentation)

["mris_curvature_stats"]

["mris_label2annot"]

["mri_annotation2label"]

["mris_make_template"]

["mri_make_template"]

Test Pages

GrahamWideman (last edited 2013-10-10 03:40:06 by GrahamWideman)