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| ||'''Concepts'''|| || | |
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| ||<^>...RegTemplateParcAtlas/TemplateCreate||Creating a '''template''' for spherical registration (mris_make_template)|| ||<^>...RegTemplateParcAtlas/TemplateUse||Using a '''template''' (mris_register)|| ||<^>...RegTemplateParcAtlas/AtlasCreate||Creating an '''atlas''' for parcellation (mris_ca_train) || ||<^>...RegTemplateParcAtlas/AtlasUse||Parcellation by applying an '''atlas''' (mris_ca_label)|| ||<^> || || |
|| || || ||'''Scripts'''|| || |
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GrahamWideman pages
Useful pages
Link |
Description |
Concepts |
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Cross-reference table showing files read and written by each step in recon-all |
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Article on labels, colortables and annotations |
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Overview: BR --Creating and using "tif" templates for spherical registration of surfacesBR --Creating and using GCA atlas files for parcellation |
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Scripts |
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Sample scripts to produce "screencaps" en masse from tksurfer and tkmedit for QA |
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Commands |
(... for which I wrote some documentation) |
["mris_curvature_stats"] |
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["mris_label2annot"] |
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["mri_annotation2label"] |
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["mris_make_template"] |
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["mri_make_template"] |
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["mris_register"] |
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