Index TableOfContents
Labels, Color Lookup Tables and Annotation Files
This page discusses the basic concepts of FreeSurfer files that relate to identifying regions-of-interest for surfaces and volumes.
- Labels:
- Color Lookup Tables
- Annotation Files
Details
Labels
Color Lookup Tables
== Annotations ==
Related pages
AnnotFiles : Some brief end-user notes on annotation files, plus MatLab and C developer notes.
- ["mris_label2annot"] : Documentation for the command-line program that amalgamates label files (plus optional color lookup table file) into a single annotation file.
- ["mri_annotation2label"] : Documentation for the command-line program that breaks an annotation file into individual label files
EditingLabels : Pointers to a couple of pages about labels
TkSurferGuide/TkSurferWorkingWithData/TkSurferLabel : Working with labels
Synopsis
command argA argB -flag1 arg1 -flag2 arg2 [-flag3 arg3] [-flag4 arg4]
Arguments
Positional Arguments
argA |
brief description |
detailed description (eg, help file information) |
argB |
brief description |
detailed description (eg, help file information) |
Required Flagged Arguments
-flag1 arg1 |
brief description |
detailed description (eg, help file information) |
-flag2 arg2 |
brief description |
detailed description (eg, help file information) |
Optional Flagged Arguments
-flag3 arg3 |
brief description |
detailed description (eg, help file information) |
-flag4 arg4 |
brief description |
detailed description (eg, help file information) |
Outputs
volume1 |
description |
volume2 |
description |
Description
description
Examples
Example 1
command foo -i f -o out
description
Example 2
command foo -i f -o out -f fvalue
description
Bugs
None
See Also
["othercommand1"], ["othercommand2"]
Links
Methods Description
description description
References
["References/Lastname###"]
Reporting Bugs
Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>