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Size: 1200
Comment:
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Size: 1533
Comment:
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| Deletions are marked like this. | Additions are marked like this. |
| Line 2: | Line 2: |
| ||Edit Type ||cross ||base ||long ||flag ||additional scenarios || ||control points ||X ||X|| || || || ||brainmask ||X ||X || || || || ||wm ||X ||X || || || || ||aseg ||X || || || || || ||brainfinalsurfs || || || || || || ||seed point, watershed ||X || || || || || ||cw256 ||X || || || || || ||talairach || || || || || || ||xopts || || || || || || ||seed point, fill & cut || || || || || || |
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| Line 3: | Line 14: |
| || Edit Type || cross || base || long || flag || additional scenarios || || control points || X || || || || || || brainmask || || || || || || || wm || X || || || || || || aseg || || || || || || || brainfinalsurfs || || || || || || || seed point, watershed || || || || || || || cw256 || || || || || || || talairach || || || || || || || xopts || || || || || || || seed point, fill & cut || || || || || || |
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| Line 16: | Line 16: |
| * After editing the base, must run both -autorecon2 & -autorecon3 for longitudinal runs to run successfully. | * After editing the base (for wm.mgz and CPs edits), must run both -autorecon2 & -autorecon3 for longitudinal runs to run successfully. |
| Line 18: | Line 18: |
| || Edit Type || cross || base || long || flag || additional scenarios || || control points || affected base surfs || || || || || || brainmask || || || || || || || wm || edits copied to long when long run from scratch || surfaces unchanged || surfaces unchanged || || test edits in cross w/o removing long || || aseg || || || || || || || brainfinalsurfs || || || || || || || seed point, watershed || || || || || || || cw256 || || || || || || || talairach || || || || || || || xopts || || || || || || || seed point, fill & cut || || || || || || |
* After editing the cross-sectionals, it is ok to just run -autorecon2 without -autorecon3. ||Edit Type ||cross ||base ||long ||flag ||additional scenarios || ||control points ||affected base surf; <<BR>>afffected long surfs ||affected long surfs|| || || || ||brainmask ||need to delete base and rerun from scratch in order for edits to work ||affected long surfs || || || || ||wm ||edits copied to long when long run from scratch; <<BR>>surfs for base and long unchanged ||affected long surfs || || ||test edits in cross w/o removing long || ||aseg ||edits copied to long but changes are unpredictable || || || || || ||brainfinalsurfs || || || || || || ||seed point, watershed ||can only adjust wsthresh for cross; <<BR>>edits copied to base ||n/a ||n/a || || || ||cw256 ||only have to use this flag once w/ recon-all for cross ||n/a ||n/a || || || ||talairach || || || || || || ||xopts || || || || || || ||seed point, fill & cut || || || || || || |
Done
Edit Type |
cross |
base |
long |
flag |
additional scenarios |
control points |
X |
X |
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brainmask |
X |
X |
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wm |
X |
X |
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aseg |
X |
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brainfinalsurfs |
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seed point, watershed |
X |
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cw256 |
X |
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talairach |
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xopts |
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seed point, fill & cut |
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Notes
* After editing the base (for wm.mgz and CPs edits), must run both -autorecon2 & -autorecon3 for longitudinal runs to run successfully.
* After editing the cross-sectionals, it is ok to just run -autorecon2 without -autorecon3.
Edit Type |
cross |
base |
long |
flag |
additional scenarios |
control points |
affected base surf; |
affected long surfs |
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|
|
brainmask |
need to delete base and rerun from scratch in order for edits to work |
affected long surfs |
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wm |
edits copied to long when long run from scratch; |
affected long surfs |
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test edits in cross w/o removing long |
aseg |
edits copied to long but changes are unpredictable |
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brainfinalsurfs |
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seed point, watershed |
can only adjust wsthresh for cross; |
n/a |
n/a |
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cw256 |
only have to use this flag once w/ recon-all for cross |
n/a |
n/a |
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talairach |
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xopts |
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seed point, fill & cut |
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