Differences between revisions 2 and 8 (spanning 6 versions)

Done

Edit Type	cross	base	long	flag	additional scenarios
control points	X
brainmask	X	X
wm	X	X
aseg	X
brainfinalsurfs
seed point, watershed	X
cw256	X
talairach
xopts
seed point, fill & cut

Notes

* After editing the base (for wm.mgz and CPs edits), must run both -autorecon2 & -autorecon3 for longitudinal runs to run successfully.

* After editing the cross-sectionals, it is ok to just run -autorecon2 without -autorecon3.

Edit Type	cross	base	long	flag	additional scenarios
control points	affected base surf; afffected long surfs
brainmask	need to delete base and rerun from scratch in order for edits to work	affected long surfs
wm	edits copied to long when long run from scratch; surfs for base and long unchanged	affected long surfs			test edits in cross w/o removing long
aseg	edits copied to long but changes are unpredictable
brainfinalsurfs
seed point, watershed	can only adjust wsthresh for cross; edits copied to base	n/a	n/a
cw256	only have to use this flag once w/ recon-all for cross	n/a	n/a
talairach
xopts
seed point, fill & cut

-  ⇤ ← Revision 2 as of 2011-03-09 14:19:27 → 
  Size: 1386
  Editor: KhoaNguyen
  Comment:
+   ← Revision 8 as of 2011-03-14 12:57:42 → ⇥
  Size: 1517
  Editor: KhoaNguyen
  Comment:
-Deletions are marked like this.
+Additions are marked like this.
 Line 4:
-||brainmask || ||X|| || || ||
||wm ||X || || || || ||
||aseg ||X|| || || || ||
+||brainmask ||X ||X || || || ||
||wm ||X ||X || || || ||
||aseg ||X || || || || ||
 Line 8:
-||seed point, watershed ||X|| || || || ||
||cw256 ||X|| || || || ||
+||seed point, watershed ||X || || || || ||
||cw256 ||X || || || || ||
 Line 16:
-* After editing the base (only wm.mgz edits), must run both -autorecon2 & -autorecon3 for longitudinal runs to run successfully.
+* After editing the base (for wm.mgz and CPs edits), must run both -autorecon2 & -autorecon3 for longitudinal runs to run successfully.
 Line 19:
-Line 20:
+Line 21:
-||control points ||affected base surfs || || || || ||
||brainmask || ||affected long surfs|| || || ||
||wm ||edits copied to long when long run from scratch; surfs for base and long unchanged ||affected long surfs|| || ||test edits in cross w/o removing long ||
||aseg ||edits copied to long but changes are unpredictable|| || || || ||
+||control points ||affected base surf; <<BR>>afffected long surfs || || || || ||
||brainmask ||need to delete base and rerun from scratch in order for edits to work ||affected long surfs || || || ||
||wm ||edits copied to long when long run from scratch; <<BR>>surfs for base and long unchanged ||affected long surfs || || ||test edits in cross w/o removing long ||
||aseg ||edits copied to long but changes are unpredictable || || || || ||
-Line 25:
+Line 26:
-||seed point, watershed ||can only adjust wsthresh for cross; edits copied to base ||n/a||n/a|| || ||
||cw256 ||only have to use this flag once w/ recon-all for cross||n/a||n/a|| || ||
+||seed point, watershed ||can only adjust wsthresh for cross; <<BR>>edits copied to base ||n/a ||n/a || || ||
||cw256 ||only have to use this flag once w/ recon-all for cross ||n/a ||n/a || || ||