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This is a list of future Martinos Dev meeting topics. Martinos Dev meets at 2pm on Wednesdays in the CSRL meeting room in Building 149. Please add requests or volunteer to present your own topics. Martinos-dev is a meeting-group and mailing-list targeted at the software developers within the Martinos Center. Topics of discussion are wide ranging. See the list of past topics below for examples. Martinos-dev group meetings take place at '''2pm on Wednesdays''' in the '''CSRL meeting room''' in '''Building 149'''. An announcement is sent to the '''''[[https://mail.nmr.mgh.harvard.edu/mailman/listinfo/martinos-dev|martinos-dev mailing-list]]''''' if a meeting is to held.
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== Topics == Please add requests or volunteer to present your own topics. Add to this wiki and send an email to the list.
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 * 10/26: JoshSnyder - Code review. ----
== Upcoming Topics ==
----
 * TBD

== Requests ==
 * Smart/Auto pointers in VTK
 * Different types of code review processes for different situation (security, optimization, etc)
 * Unit testing libraries and tools
 * Defensive programming techniques
 * Eclipse: matlab plugin, emacs like keybindings or actual plugin of emacs editor

----
== Past Topics ==
----
==== 2005 ====
 * 10/26/2005: JoshSnyder - Code review.
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 * 1/4: DennisJen - Process and content management using Plone ==== 2006 ====
 * 1/4/2006: DennisJen - Process and content management using Plone
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 * 2/8: JoshSnyder and DennisJen - VTK and Qt as a platform volume viewing and editing
 * 2/15: Canceled
 * 2/22: Canceled
 * 3/1: Canceled
 * 3/8: NickSchmansky - see [[Doxygen|doxygen]]
 * 3/15: Cancelled/awaiting sign-up
 * 4/12: KevinTeich - Code naming [[DevelopersGuide/CodingGuide/NamingConventions| NamingConventions]]
 * 4/19: JoshSnyder - General Development Practices, see http://www.acmqueue.org/modules.php?name=Content&pa=showpage&pid=69&page=1
 * 4/26: JoshSnyder, DennisJen - Code review of some numerical recipe replacments. Following [[http://www.processimpact.com/articles/inspects.html|this]] process, NickSchmansky will act as reader, KevinTeich as moderator, DennisJen as recorder, and JoshSnyder as inspector. Other participants are welcome to take part as additional inspectors. It would also be great to get another volunteer for recorder who hasn't worked on the code.
 * 5/3/2006: NickSchmansky - talk about current and future state of search tools, and how we could benefit from 'smart' tools, like those offered by [[http://www.autonomy.com|Autonomy]]. See also [[http://www.searchtools.com/info/classifiers.html|this primer]], and [[http://www.autonomy.com/content/Products/IDOL/f/Classification.html|this one]]. And see [[http://www.searchtools.com/tools/tools-opensource.html|this list of existing open-source search tools]], which could be setup today as a front-end to our wiki and mailing-list.
 * 5/10: DougGreve - Spatial transforms in FreeSurfer
 * 5/17: JoshSnyder - Code review. See martinos-dev e-mail for details.
 * 5/24: Canceled
 * 5/31: All - Advances in software environment for P41 advisory board meeting - See SoftwareEnvironmentAdvances
 * 10/18/2006: GheorghePostelnicu - types of wikis; creation of local projects wiki - See [[http://www.onlamp.com/pub/a/onlamp/2004/11/04/which_wiki.html|this]] and [[http://www.shlomifish.org/philosophy/computers/web/which-wiki/update-2006-07/|this]].
==== 2007 ====
 * 2/28/2007: DennisJen: Code review of /homes/10/dsjen/public/code/itkPoistatsFilter.txx starting from the GenerateData() function. ITK style guide at /homes/10/dsjen/public/ITKStyle.pdf
 * 7/11/2007: KevinTeich: Presentation on KWWidgets
 * 7/25/2007: RudolphPienaar: Code Review
 * 8/8/2007: DennisJen: KWStyle [[http://public.kitware.com/KWStyle/]]
 * 9/5/2007: Tentative -- TBA
==== 2008 ====
 *
 *
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== Requests ==
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 * using Doxygen, http://www.stack.nl/~dimitri/doxygen/ (nick)
 * applying Knowledge Management tools to extract an ontology from the Freesurfer mailing list (to categorize emails), discuss these topics: http://www.searchtools.com/info/classifiers.html, http://www.autonomy.com/content/Products/IDOL/f/Classification.html, (nick)
 * Eclipse: matlab plugin, emacs like keybindings or actual plugin of emacs editor (JoshSnyder)
 
----
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NRRD file format
 * [http://teem.sourceforge.net/nrrd/format.html Full format definition]
 * [http://www.na-mic.org/Wiki/index.php/NAMIC_Wiki:DTI:Nrrd_format DTI specific use]		 ----
 * [[Licensing|Licensing issues]]
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NumericalRecipesReplacement  * Doxygen
  * [[Doxygen|doxygen]]
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Process and Content Management Using Plone
 * [http://abbey:8089/freediffusion Local Plone Test Site]		  * Fast Volume Editing Prototype using VTK, QT, and Python
  * SVN Repository: file:///space/odin/8/users/freediffusion/repos/svnrepos-freediffusion-fastvolumeedit
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Interruption Management
 * [http://www.google.com/search?hl=en&q=life+hacks]
 * [http://www.43folders.com/]
 * [http://interruptions.net/literature/Dekel-OOPSLA04.pdf]
 * [http://domino.research.ibm.com/cambridge/research.nsf/0/8fa06db80b048edf85256ed80064a301?OpenDocument]		  * NRRD file format
  * [[http://teem.sourceforge.net/nrrd/format.html|Full format definition]]
  * [[http://www.na-mic.org/Wiki/index.php/NAMIC_Wiki:DTI:Nrrd_format|DTI specific use]]
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Process Tool and IDE Comparisons
 * [http://www.nmr.mgh.harvard.edu/~dsjen/process/ProjectManagementOutline.html Process Tool Comparisons Outline]
  * Plone plugins we'll use:
   * [http://plone.org/products/zepp Zepp Workflow]
   * [http://plone.org/products/poi Poi Issue Tracking]
 * [http://www.nmr.mgh.harvard.edu/~dsjen/process/IDEMindMapOutline.html IDE Comparisons]
  * Interesting Eclipse plugins:
   * [http://www.eclipse.org/cdt/ CDT (C++ Plugin)]
   * [http://www.eclipse-plugins.info/eclipse/plugin_details.jsp?id=1166 CDTSplint (Splint Plugin]
   * [http://subclipse.tigris.org Subclipse (SVN Plugin)]
   * [http://subclipse.tigris.org PyDev (Python plugin)]		  * NumericalRecipesReplacement
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Code Review
 * [http://www.processimpact.com/articles/inspects.html Process]
 * Pretty printing source code from Linux: enscript -r -2 -C -E<language> -P <printer> <filename>, where language is c or cpp, printer is the name of your printer as you would pass it to lpr, and filename is the .c or .cpp file. This will queue the file to the printer.		  * Process and Content Management Using Plone
  * [[http://abbey:8089/freediffusion|Local Plone Test Site]]
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In-house Code
  RudolphPienaar has put together a [http://www.nmr.mgh.harvard.edu/~rudolph/software/toolsAndUtilities/internal/internal.html page] to keep track of code developers have available for in-house use. Please feel free to email him to contribute your own code.		  * Interruption Management
  * [[http://www.google.com/search?hl=en&q=life+hacks]]
  * [[http://www.43folders.com/]]
  * [[http://interruptions.net/literature/Dekel-OOPSLA04.pdf]]
  * [[http://domino.research.ibm.com/cambridge/research.nsf/0/8fa06db80b048edf85256ed80064a301?OpenDocument]]
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 * Process Tool and IDE Comparisons
  * [[http://www.nmr.mgh.harvard.edu/~dsjen/process/ProjectManagementOutline.html|Process Tool Comparisons Outline]]
   * Plone plugins we'll use:
    * [[http://plone.org/products/zepp|Zepp Workflow]]
    * [[http://plone.org/products/poi|Poi Issue Tracking]]
  * [[http://www.nmr.mgh.harvard.edu/~dsjen/process/IDEMindMapOutline.html|IDE Comparisons]]
   * Interesting Eclipse plugins:
    * [[http://www.eclipse.org/cdt/|CDT (C++ Plugin)]]
    * [[http://www.eclipse-plugins.info/eclipse/plugin_details.jsp?id=1166|CDTSplint (Splint Plugin]]
    * [[http://subclipse.tigris.org|Subclipse (SVN Plugin)]]
    * [[http://subclipse.tigris.org|PyDev (Python plugin)]]

 * Code Review
  * [[http://www.processimpact.com/articles/inspects.html|Process]]
  * Pretty printing source code from Linux: enscript -r -2 -C -E<language> -P <printer> <filename>, where language is c or cpp, printer is the name of your printer as you would pass it to lpr, and filename is the .c or .cpp file. This will queue the file to the printer. For two-sided printing (if avaialble), add-o sides=two-sided-long-edge to the end.

 * In-house Code
  RudolphPienaar has put together a [[http://www.nmr.mgh.harvard.edu/~rudolph/software/toolsAndUtilities/internal/internal.html|page]] to keep track of code developers have available for in-house use. Please feel free to email him to contribute your own code.

 * Rapid Abstract Prototyping
  * [[http://www.foruse.com/articles/abstractprototypes.pdf|Software Development article (pdf)]]

 * Wikis
  * [[http://www.onlamp.com/pub/a/onlamp/2004/11/04/which_wiki.html|Which Open Source Wiki Works For You?]]
  * [[http://www.shlomifish.org/philosophy/computers/web/which-wiki/update-2006-07/|July 2006 Update to "Which Wiki"]]

 * KWWidgets
  * demo code at ~kteich/work/kwdemo

Martinos Dev Meetings Topics

Martinos-dev is a meeting-group and mailing-list targeted at the software developers within the Martinos Center. Topics of discussion are wide ranging. See the list of past topics below for examples. Martinos-dev group meetings take place at 2pm on Wednesdays in the CSRL meeting room in Building 149. An announcement is sent to the martinos-dev mailing-list if a meeting is to held.

Please add requests or volunteer to present your own topics. Add to this wiki and send an email to the list.

Upcoming Topics

  • TBD

Requests

  • Smart/Auto pointers in VTK
  • Different types of code review processes for different situation (security, optimization, etc)
  • Unit testing libraries and tools
  • Defensive programming techniques
  • Eclipse: matlab plugin, emacs like keybindings or actual plugin of emacs editor

Past Topics

2005

  • 10/26/2005: JoshSnyder - Code review.

  • 11/2: NickSchmansky - Use of splint to verify and standardize code.

  • 11/9: DennisJen - Comparison of IDEs and project management tools.

  • 11/16: Cancelled
  • 11/23: Vacation

  • 11/30: DavidTuch - Interruption management

  • 12/7: Town hall meeting

  • 12/14: FreeSurferWiki tutorial

  • 12/21: Vacation
  • 12/28: Vacation

2006

2007

2008

Resources from past meetings