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| Parent: MorphoOptimizationProject |
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| === Creating shape manipulation functions === See [[MorphoOptimizationProject_Manipulating_MRIS_et_al]] |
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| mris_fix_topology has a hot loop, which does unnecessary calculations of the face normals mrisComputeOptimalRetessellation and mrisComputeRandomRetessellation have a similar structure _:_: then it loops over a set of patches, or iterates on one patch. For each patch it calls _:_:_: mrisDefectPatchFitness, which calls _:_:_:_: mrisComputeDefectLogLikelihood, which calls _:_:_:_:_: mrisComputeDefectMRILogUnlikelihood, which _:_:_:_:_:_: does an expensive computation all the face normals for ALL the faces _:_:_:_:_:_: does two other expensive steps, which only use a few of the face normals To simplify, the original code does this loop for all fno normal[fno] = f (inputs) for a few fno use normal[fno] change some inputs end loop change some inputs use some normal[fno] Since only a few of the face normals are used, it is a waste of time to calculate all of them every time around the loop! This is replaced by code that does loop for all fno __normal[fno].deferred = true__ for a few fno __if normal[fno].deferred normal[fno] = f (inputs); normal[fno].deferred = false__ change some inputs end loop __for a few fno if normal[fno].deferred normal[fno] = f (inputs); normal[fno].deferred = false__ change some inputs use some normal[fno] |
See [[MorphoOptimizationProject_Deferring_calculations]] |
Parent: MorphoOptimizationProject
A variety of techniques have been used.
Creating shape manipulation functions
See MorphoOptimizationProject_Manipulating_MRIS_et_al