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| === Creating shape manipulation functions === See [[MorphoOptimizationProject_Manipulating_MRIS_et_al]] |
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| mris_fix_topology has a hot loop, which does unnecessary calculations of the face normals mrisComputeOptimalRetessellation and mrisComputeRandomRetessellation have a similar structure _:_: it loops over a set of patches, or iterates on one patch. For each patch it calls _:_:_: mrisDefectPatchFitness, which calls _:_:_:_: mrisComputeDefectLogLikelihood, which calls _:_:_:_:_: mrisComputeDefectMRILogUnlikelihood, which _:_:_:_:_:_: does an expensive computation all the face normals for ALL the faces _:_:_:_:_:_: does two other expensive steps, which only use a few of the face normals To simplify, the original code does this _: loop _:_: for all fno normal[fno] = f (inputs) _:_: for a few fno use normal[fno] _: end loop _: change some inputs _: use some normal[fno] Since only a few of the face normals are used, it is a waste of time to calculate all of them every time around the loop! This is replaced by code that does _: loop _:_: for all fno: normal[fno].deferred = true _:_: for a few fno: use normal[fno], computing it from f (inputs) if is deferred, and changing it to being no-longer deferred _: end loop _: compute any remaining deferred normal[fno] before their inputs can change _: change some inputs _: use some normal[fno] |
See [[MorphoOptimizationProject_Deferring_calculations]] |
Parent: MorphoOptimizationProject
A variety of techniques have been used.
Creating shape manipulation functions
See MorphoOptimizationProject_Manipulating_MRIS_et_al