|
Size: 603
Comment:
|
Size: 965
Comment:
|
| Deletions are marked like this. | Additions are marked like this. |
| Line 1: | Line 1: |
| = FreeSurfer and LCN Python Development = If you're a frequent python developer who uses multiple package versions or environments, please install your own local [[https://docs.conda.io/en/latest/miniconda.html|mini-conda distribution]]. It will give you full access and control of the installed packages. To facilitate quick access to python utilities in the lab, a local conda distribution for internal developers is installed at `/autofs/cluster/freesurfer/python/linux`. To use this version, make sure all calls to `python` or `python3` point to this install by adding the following to your `PATH`: |
|
| Line 2: | Line 8: |
| export PATH=/space/freesurfer/python/linux/bin:$PATH | export PATH=/autofs/cluster/freesurfer/python/linux/bin:$PATH |
| Line 5: | Line 11: |
| After setting this, any calls to python or python3 will use this install. Keep in mind that there's also a python3 link in `/usr/pubsw/bin`, so it's important that you `/space/freesurfer/python/linux/bin` comes first in your PATH. === Tensorflow GPU === If you're on a machine with cuda installed, you can use the gpu-enabled tensorflow by modifying the following search paths. {{{ export PYTHONPATH=/space/freesurfer/python/linux/tensorflow-gpu:$PYTHONPATH export LD_LIBRARY_PATH=/usr/local/cuda/lib64:$LD_LIBRARY_PATH }}} |
Keep in mind there's also a `python3` link in `/usr/pubsw/bin`, so it's important that `/autofs/cluster/freesurfer/python/linux/bin` comes before that in your `PATH`. If you want a python package installed into this distribution, email [[avnish.kumar@mgh.harvard.edu|Avnish]]. |
FreeSurfer and LCN Python Development
If you're a frequent python developer who uses multiple package versions or environments, please install your own local mini-conda distribution. It will give you full access and control of the installed packages.
To facilitate quick access to python utilities in the lab, a local conda distribution for internal developers is installed at /autofs/cluster/freesurfer/python/linux. To use this version, make sure all calls to python or python3 point to this install by adding the following to your PATH:
export PATH=/autofs/cluster/freesurfer/python/linux/bin:$PATH
Keep in mind there's also a python3 link in /usr/pubsw/bin, so it's important that /autofs/cluster/freesurfer/python/linux/bin comes before that in your PATH. If you want a python package installed into this distribution, email Avnish.