Diff for "QdecProject/FeatureList"

Differences between revisions 1 and 8 (spanning 7 versions)

Feature List

	General:
	Run on app on Linux, Mac and Windows. (Windows requirement could be fulfilled by Slicer Qdec module).
done	GUI-less module to support usage with XNAT (dan marcus, tim olsen) and usage with Slicer3 (steve pieper and ron kikinis)
done	XNAT: support for local XNAT and client-server XNAT
	Input:
done	selection of SUBJECTS_DIR (default taken from enviro on startup)
done	selection of an average subject (default is fsaverage)
done	parse an input file of stats engine input parameters
	Stats Engine:
done	output files tarballable and able to load (saving all parameters used to create output)
	support for writing out the fsgd and contrasts without forcing an analysis
	must work with more than two levels in a discrete factor (up to 11, which is the current default max)
	allow saving the design covariance matrix
	Display:
	support for correcting for multiple comparisions:
done	-- incorporate False Discovery Rate (FDR)
	-- clustering/GRF: at least generate a script which can be run
	show residual FWHM
done	hide green-cross hairs (so that it is not visible when a snapshot is taken)
	lock rotation to x,y,z axes (so that spinning the brain is easier)
done	make sure Ctrl-left click always selects a point on the surface (as OpenGL point selector has no concept of our brain surface, and can pick outside points)
	vertex data scatter plot:
	-- allow saving the plot display and data
	-- save plot in .eps format
	-- keep plots a constant width, so snapshots are consistent (that is, don't change size from point to point to make room for varying label name widths)
	-- allow setting min and max axis values
done	ROI selection (see Jenni's use case, #7)
	mouse selection keys should match those in tksurfer (brucef)
	optionally display Christophe annotations
	display raw average thickness data, via 'mri_concat --i y.mgh --mean --o y-mean.mgh'

-  ⇤ ← Revision 1 as of 2008-01-09 14:21:08 → 
  Size: 1929
  Editor: NickSchmansky
  Comment:
+   ← Revision 8 as of 2008-01-09 18:13:49 → ⇥
  Size: 2337
  Editor: NickSchmansky
  Comment:
-Deletions are marked like this.
+Additions are marked like this.
 Line 7:
-|| General ||
|| || Run as an integrate app on Linux, Mac and Windows.  (Windows requirement could be fulfilled by Slicer Qdec module). ||
|| || GUI-less module to support usage with XNAT (dan marcus, tim olsen) and usage with Slicer3 (steve pieper and ron kikinis) ||
|| || XNAT: support for local XNAT and client-server XNAT ||
|| Input ||
|| || selection of SUBJECTS_DIR (default taken from enviro on startup) ||
|| || selection of an average subject (default is fsaverage) ||
|| || parse an XML file of stats engine input parameters ||
|| Analysis Engine ||
|| || output files wrapped in XML?  must be tarballable and able to load (saving all parameters used to create output) ||
+|| || '''''General:''''' ||
|| || Run on app on Linux, Mac and Windows.  (Windows requirement could be fulfilled by Slicer Qdec module). ||
|| '''done''' || GUI-less module to support usage with XNAT (dan marcus, tim olsen) and usage with Slicer3 (steve pieper and ron kikinis) ||
|| '''done''' || XNAT: support for local XNAT and client-server XNAT ||
|| || '''''Input:''''' ||
|| '''done''' || selection of SUBJECTS_DIR (default taken from enviro on startup) ||
|| '''done''' || selection of an average subject (default is fsaverage) ||
|| '''done''' || parse an input file of stats engine input parameters ||
|| || '''''Stats Engine:''''' ||
|| '''done''' || output files tarballable and able to load (saving all parameters used to create output) ||
 Line 20:
-|| Display ||
|| || support for correcting for multiple comparisions: incorporating False Discovery Rate (FDR) and clustering/GRF in the viewer ||
+|| || '''''Display:''''' ||
|| || support for correcting for multiple comparisions: ||
|| '''done''' || -- incorporate False Discovery Rate (FDR) ||
|| || -- clustering/GRF: at least generate a script which can be run ||
-Line 23:
+Line 25:
-|| || hide green-cross hairs (so that it is not visible when a snapshot is taken) ||
+|| '''done''' || hide green-cross hairs (so that it is not visible when a snapshot is taken) ||
-Line 25:
+Line 27:
-|| || make sure Ctrl-left click ''always'' selects a point on the surface (as OpenGL point selector has no concept of our brain surface, and can pick outside points) ||
+|| '''done''' || make sure Ctrl-left click ''always'' selects a point on the surface (as OpenGL point selector has no concept of our brain surface, and can pick outside points) ||
-Line 27:
+Line 29:
-|| || allow saving the plot display and data ||
|| || save plot in .eps format ||
|| || keep plots a constant width, so snapshots are consistent (that is, don't change size from point to point to make room for varying label name widths) ||
|| || allow setting min and max axis values ||
|| || ROI selection (see Jenni's use case, #7) ||
+|| || -- allow saving the plot display and data ||
|| || -- save plot in .eps format ||
|| || -- keep plots a constant width, so snapshots are consistent (that is, don't change size from point to point to make room for varying label name widths) ||
|| || -- allow setting min and max axis values ||
|| '''done''' || ROI selection (see Jenni's use case, #7) ||
|| || mouse selection keys should match those in tksurfer (brucef) ||
|| || optionally display Christophe annotations ||
|| || display raw average thickness data, via 'mri_concat --i y.mgh --mean --o y-mean.mgh' ||