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recon-all . . . 2 matches
...'''recon-all''' (See also ReconAllDevTable, OtherUsefulFlags and [[http://grahamwideman.com/gw/brain/fs/fsunderstanding2006/processvsdata2006.htm|ProcessVsFilesTable]]) '''Index''...

34.9k - rev: 47 (current) last modified: 2017-12-08 18:23:09

ReconAllChanges . . . 2 matches
...ad use the new set of flags (-autorecon1, -autorecon2, -autorecon3, etc.) See the ReconAllDevTable for a list of flags. *the new recon-all will not accept COR format, only .mgz f...

4.5k - rev: 23 (current) last modified: 2012-03-26 16:48:36

RecommendedReconstruction . . . 2 matches
...h and the skullstrip) which can save both time and use of computer power. See the ReconAllDevTable for a list of all the steps associated with each recon stage, or ReconAllBlockDia...

3.7k - rev: 36 (current) last modified: 2014-08-20 11:34:47

FreeSurferVersion3 . . . 2 matches
...d labeling of the brain volume and this is included in the stable v3.0 release, [[ReconAllDevTable|during the -autorecon2 stage]]. However, if you processed your anatomical data u...

3.5k - rev: 4 (current) last modified: 2021-09-22 11:42:15

TestPlan . . . 1 match
...im of these tests is simple: the output files produced by the recon-all stream ([[ReconAllDevTable|as documented here]]) must be 'correct'''', relative to reference files which are...

6.5k - rev: 16 (current) last modified: 2021-05-10 08:29:13

SubcorticalSegmentation . . . 1 match
...em, Cerebrospinal Fluid FreeSurfer runs automated labeling of the brain volume [[ReconAllDevTable|during the -autorecon2 stage]]. The automatic subcortical segmentation can tak...

4.9k - rev: 41 (current) last modified: 2018-01-04 15:07:58

ReconAllTableStableV5 . . . 1 match
...s Flow == This table shows the recon-all steps for version 5.0 of FreeSurfer. See ReconAllDevTable for the most current development-code process flow. Click [[ReconAllBlockDiagram...

13.4k - rev: 3 (current) last modified: 2012-03-26 16:47:16

ReconAllTable . . . 1 match
...ectory from which the command is being run. Here is a list of tables we have: * ReconAllDevTable - this table is updated as changes are made during ongoing development of !FreeSu...

1.2k - rev: 22 (current) last modified: 2017-10-24 13:48:37

ReconAllStableTablev4 . . . 1 match
...on-all steps for the latest '''stable''' version of FreeSurfer, '''v4.0.2'''. See ReconAllDevTable for the dev version of FreeSurfer. Click [[ReconAllBlockDiagram|here]] to see th...

15.1k - rev: 8 (current) last modified: 2012-03-26 16:47:44

OtherUsefulFlags . . . 1 match
... == FreeSurfer Tutorial: Useful recon-all flags. == This page extends ReconAllDevTable. The following flags can be used in conjunction with individual steps or the entire proces...

29.7k - rev: 135 (current) last modified: 2017-04-25 13:53:01

FsTutorial/TroubleshootingDataV6.0 . . . 1 match
...tly used commands. Greater detail is provided the [[ReconAllTableStableV6.0]] and ReconAllDevTable. ---- === Frequently used commands === The following commands depend on the edit...

19.3k - rev: 39 (current) last modified: 2022-09-14 14:39:50

FsTutorial/TroubleshootingDataTESTING . . . 1 match
...49"}} <<BR>><<BR>> Greater detail is provided the [[ReconAllTableStableV5.3]] and ReconAllDevTable. ---- === Frequently used commands === The following commands depend on the edit...

17.1k - rev: 74 (current) last modified: 2022-08-26 10:33:42

FsTutorial/TroubleshootingData . . . 1 match
...49"}} <<BR>><<BR>> Greater detail is provided the [[ReconAllTableStableV5.3]] and ReconAllDevTable. ---- === Frequently used commands === The following commands depend on the edit...

17.1k - rev: 2 (current) last modified: 2022-09-14 13:40:29

FsTutorial/MorphAndRecon . . . 1 match
...ction of the wiki. For a listing of the individual flags used with recon-all see ReconAllDevTable and OtherUsefulFlags. === 3.0 Volume Processing: a detailed look === '''3.1 Cr...

31.2k - rev: 48 (current) last modified: 2021-09-22 11:39:46