Segmentation of thalamic nuclei

This functionality will be soon available in the development version of FreeSurfer.

Author: Juan Eugenio Iglesias

E-mail: e.iglesias [at] ucl.ac.uk

Rather than directly contacting the author, please post your questions on this module to the FreeSurfer mailing list at freesurfer [at] nmr.mgh.harvard.edu

If you use this tool in your analysis, please cite:


Since the robustness against MR contrast / orientation /resolution with a single model was not presented in the original SynthSR paper, we would also greatly appreciate it if you could please also cite:

This tool implements SynthSR, a convolutional neural network that turns a clinical MRI scan (or even CT scan!) of any orientation, resolution and contrast into 1 mm isotropic MP-RAGE. You can then run your favorite neuroimaging software on these synthetic images for segmentation / registration / any other analysis.