|
Size: 1643
Comment:
|
← Revision 10 as of 2008-04-29 11:45:58 ⇥
Size: 1918
Comment: converted to 1.6 markup
|
| Deletions are marked like this. | Additions are marked like this. |
| Line 1: | Line 1: |
| Whenever a file name is required to load or save data, the following system is used. First, on startup, TkMedit attempts to acquire a User Home Directory and a Subject Home Directory. The User Home Directory is always the current directory from which TkMedit was launched. The Subject Home Directory is based on the way in which the anatomical data was loaded. If the default TkMedit loading method is used, it is the concatenated contents of $SUBJECTS_DIR and the subject name. If the -f switch is used, it is the value of that parameter. | ||Up to TkMeditGuide||Back to [[../TkMeditSampleScreenshotScript| TkMeditSampleScreenshotScript]]||Continue to [[../TkMeditCommandLineOptions| TkMeditCommandLineOptions]]|| = File Name Substitution = Whenever a file name is required to load or save data, the following system is used. First, on startup, TkMedit attempts to acquire a User Home Directory and a Subject Home Directory. The User Home Directory is always the current directory from which TkMedit was launched. The Subject Home Directory is based on the way in which the anatomical data was loaded. If the default TkMedit loading method is used, it is the concatenated contents of {{{$SUBJECTS_DIR}}} and the subject name. If the {{{-f}}} switch is used, it is the value of that parameter. |
| Line 5: | Line 9: |
| If the first character of FILENAME is.... |
||''If the first character of FILENAME is....''||''The final file name is...''|| ||~ (tilde)||SUBJECT_HOME_DIR/FILENAME|| ||. (period)||USER_HOME_DIR/FILENAME|| ||/ (slash)||FILENAME|| ||other character||Subject-home-dir/Subdirectory/FILENAME|| |
| Line 8: | Line 15: |
| The final file name is... ~ (tilde) SubjectHomeDir/FILENAME . (period) UserHomeDir/FILENAME / (slash) FILENAME other character SubjectHomeDir/Subdirectory/FILENAME ...where FILENAME is the file name that was input. |
...where {{{FILENAME}}} is the file name that was input. |
| Line 36: | Line 19: |
| Data Type Subdirectory Functional data fmri Head Points bem Surface surf Anatomical mri ROI/Label label RGB image/rgb Control Points (control.dat) tmp Edit (edit.dat) tmp |
||Data Type||Subdirectory|| ||Head Points||bem|| ||Surface||surf|| ||Anatomical||mri|| ||ROI/Label||label|| ||RGB||image/rgb|| ||Control Points (control.dat)||tmp|| ||Edit (edit.dat)||tmp|| ||Segmentation||mri|| ||Color Table||$CSURF_DIR|| ||Label||label|| ||Anatomical Transform||mri/transforms|| |
Up to TkMeditGuide |
Back to TkMeditSampleScreenshotScript |
Continue to TkMeditCommandLineOptions |
File Name Substitution
Whenever a file name is required to load or save data, the following system is used. First, on startup, TkMedit attempts to acquire a User Home Directory and a Subject Home Directory. The User Home Directory is always the current directory from which TkMedit was launched. The Subject Home Directory is based on the way in which the anatomical data was loaded. If the default TkMedit loading method is used, it is the concatenated contents of $SUBJECTS_DIR and the subject name. If the -f switch is used, it is the value of that parameter.
If the first character of the file name is ~ (tilde) or . (period), it is substituted with the Subject Home Directory or User Home Directory, respectively. If the first character is another alphanumeric character, a default location directory is prepended to the file name. If the first character is / (slash), it is left alone. This behavior is summarized below:
If the first character of FILENAME is.... |
The final file name is... |
~ (tilde) |
SUBJECT_HOME_DIR/FILENAME |
. (period) |
USER_HOME_DIR/FILENAME |
/ (slash) |
FILENAME |
other character |
Subject-home-dir/Subdirectory/FILENAME |
...where FILENAME is the file name that was input.
The subdirectory used in the last substitution depends on the file type being loaded, and is appropriate for the standard NMR center directory structure. These are:
Data Type |
Subdirectory |
Head Points |
bem |
Surface |
surf |
Anatomical |
mri |
ROI/Label |
label |
RGB |
image/rgb |
Control Points (control.dat) |
tmp |
Edit (edit.dat) |
tmp |
Segmentation |
mri |
Color Table |
$CSURF_DIR |
Label |
label |
Anatomical Transform |
mri/transforms |