|
Size: 2911
Comment: New page.
|
Size: 3037
Comment: Moved CVS access to Done.
|
| Deletions are marked like this. | Additions are marked like this. |
| Line 1: | Line 1: |
| Ftp access | = Needs to be incorporated = |
| Line 3: | Line 3: |
| * Ftp access for sending data and receiving binaries from us? <http://www.nmr.mgh.harvard.edu/%7Etosa/#ftp> |
|
| Line 9: | Line 7: |
| <http://www.nmr.mgh.harvard.edu/%7Etosa/#PBS> | < http://www.nmr.mgh.harvard.edu/%7Etosa/#PBS > |
| Line 11: | Line 9: |
Coordinate Systems * What kind of coordinate systems are used? <http://www.nmr.mgh.harvard.edu/%7Etosa/#coords> Low-res vs. high-res vertex positions * What is the value of a lowres vertex position given a highres vertex position? <http://www.nmr.mgh.harvard.edu/%7Etosa/#surfras> Direction cosines * How is the direction cosine information obtained? <http://www.nmr.mgh.harvard.edu/%7Etosa/#dcos> |
|
| Line 30: | Line 13: |
| <http://www.nmr.mgh.harvard.edu/%7Etosa/#seg> | < http://www.nmr.mgh.harvard.edu/%7Etosa/#seg > |
| Line 35: | Line 18: |
| <http://www.nmr.mgh.harvard.edu/%7Etosa/#template> | < http://www.nmr.mgh.harvard.edu/%7Etosa/#template > |
| Line 40: | Line 23: |
| <http://www.nmr.mgh.harvard.edu/%7Etosa/#atandpound> | < http://www.nmr.mgh.harvard.edu/%7Etosa/#atandpound > |
| Line 45: | Line 28: |
| <http://www.nmr.mgh.harvard.edu/%7Etosa/#mritransform> | < http://www.nmr.mgh.harvard.edu/%7Etosa/#mritransform > |
| Line 50: | Line 33: |
| a unit matrix? <http://www.nmr.mgh.harvard.edu/%7Etosa/#tksurfertal> | a unit matrix? < http://www.nmr.mgh.harvard.edu/%7Etosa/#tksurfertal > |
| Line 55: | Line 38: |
| <http://www.nmr.mgh.harvard.edu/%7Etosa/#lh.sulc> | < http://www.nmr.mgh.harvard.edu/%7Etosa/#lh.sulc > |
| Line 60: | Line 43: |
| <http://www.nmr.mgh.harvard.edu/%7Etosa/#corparc> | < http://www.nmr.mgh.harvard.edu/%7Etosa/#corparc > |
| Line 65: | Line 48: |
| <http://www.nmr.mgh.harvard.edu/%7Etosa/#gca> | < http://www.nmr.mgh.harvard.edu/%7Etosa/#gca > |
| Line 70: | Line 53: |
| <http://www.nmr.mgh.harvard.edu/%7Etosa/#subcor> | < http://www.nmr.mgh.harvard.edu/%7Etosa/#subcor > |
| Line 75: | Line 58: |
| <http://www.nmr.mgh.harvard.edu/%7Etosa/#deface> | < http://www.nmr.mgh.harvard.edu/%7Etosa/#deface > |
| Line 81: | Line 64: |
| <http://www.nmr.mgh.harvard.edu/%7Etosa/#monkey> | < http://www.nmr.mgh.harvard.edu/%7Etosa/#monkey > DICOM file format info * How can I see a *DICOM functional image*? < http://www.nmr.mgh.harvard.edu/%7Etosa/#dicom > * How can I get the *image position/orientation of a DICOM file*? = Already incorporated = Coordinate Systems * What kind of coordinate systems are used? < http://www.nmr.mgh.harvard.edu/%7Etosa/#coords > Low-res vs. high-res vertex positions * What is the value of a lowres vertex position given a highres vertex position? < http://www.nmr.mgh.harvard.edu/%7Etosa/#surfras > Direction cosines * How is the direction cosine information obtained? < http://www.nmr.mgh.harvard.edu/%7Etosa/#dcos > |
| Line 86: | Line 94: |
| <http://www.nmr.mgh.harvard.edu/%7Etosa/dicom/2003.html> | < http://www.nmr.mgh.harvard.edu/%7Etosa/dicom/2003.html > |
| Line 88: | Line 96: |
| * How can I see a *DICOM functional image*? <http://www.nmr.mgh.harvard.edu/%7Etosa/#dicom> * How can I get the *image position/orientation of a DICOM file*? |
Medical Image Formats info. * FAQ on Medical Image Format < http://www.nmr.mgh.harvard.edu/%7Etosa/#imageformat > Ftp access * Ftp access for sending data and receiving binaries from us? < http://www.nmr.mgh.harvard.edu/%7Etosa/#ftp > |
| Line 95: | Line 111: |
| <http://www.nmr.mgh.harvard.edu/%7Etosa/#cvs> Medical Image Formats info. * FAQ on Medical Image Format <http://www.nmr.mgh.harvard.edu/%7Etosa/#imageformat> |
< http://www.nmr.mgh.harvard.edu/%7Etosa/#cvs > |
Needs to be incorporated
PBS
- How can I use the batch queuing system *PBS* on seychelles?
- How can I hold the queue until some queues finish?
Segmented volume
- How can I create a segmented volume and see it?
Template Atlas
- How can I create a template atlas file?
File name extensions
- What is the use of @ and # for filename?
Talairach transformed image
- How can I create talairach transformed image?
Tkmedit and talairach coordinates
- Why tksurfer shows non-unit talairach even though talairach.xfm is
a unit matrix? < http://www.nmr.mgh.harvard.edu/%7Etosa/#tksurfertal >
Data formats in lh/rh.sulc.
- What are the data in *lh.sulc* and rh.sulc?
Cortical parcellation
- How can I do *cortical parcellation*?
Subcortical segmentation atlas creation
- How can I create *subcortical segmentation atlas*?
Using the subcortical segmentation to create automatic segmentation
- How can I create *subcortical segmentation*?
Defacing a subject
- How can I do the defacing of a subject?
Monkey brain processing
- How can I normalize Monkey brain?
DICOM file format info
- How can I see a *DICOM functional image*?
- How can I get the *image position/orientation of a DICOM file*?
Already incorporated
Coordinate Systems
- What kind of coordinate systems are used?
Low-res vs. high-res vertex positions
- What is the value of a lowres vertex position given a highres
vertex position? < http://www.nmr.mgh.harvard.edu/%7Etosa/#surfras >
Direction cosines
- How is the direction cosine information obtained?
DICOM file format info
- DICOM Specifications
Medical Image Formats info.
- FAQ on Medical Image Format
Ftp access
- Ftp access for sending data and receiving binaries from us?
CVS remotely
- How can I CVS checkout files remotely?