Differences between revisions 3 and 11 (spanning 8 versions)
Revision 3 as of 2004-07-30 10:49:31
Size: 3003
Editor: DavidTuch
Comment: Created category for items already incorporated.
Revision 11 as of 2008-04-29 11:45:32
Size: 3102
Editor: localhost
Comment: converted to 1.6 markup
Deletions are marked like this. Additions are marked like this.
Line 3: Line 3:
Ftp access

    * Ftp access for sending data and receiving binaries from us?
      < http://www.nmr.mgh.harvard.edu/%7Etosa/#ftp >

PBS

    * How can I use the batch queuing system *PBS* on seychelles?
      < http://www.nmr.mgh.harvard.edu/%7Etosa/#PBS >
    * How can I hold the queue until some queues finish?

Coordinate Systems

    * What kind of coordinate systems are used?
      < http://www.nmr.mgh.harvard.edu/%7Etosa/#coords >

Low-res vs. high-res vertex positions

    * What is the value of a lowres vertex position given a highres
      vertex position? < http://www.nmr.mgh.harvard.edu/%7Etosa/#surfras >

Direction cosines

    * How is the direction cosine information obtained?
      < http://www.nmr.mgh.harvard.edu/%7Etosa/#dcos >
Line 48: Line 23:

Tkmedit and talairach coordinates

    * Why tksurfer shows non-unit talairach even though talairach.xfm is
      a unit matrix? < http://www.nmr.mgh.harvard.edu/%7Etosa/#tksurfertal >
Line 79: Line 49:
Line 87: Line 56:
    * How can I see a *DICOM functional image*?
      < http://www.nmr.mgh.harvard.edu/%7Etosa/#dicom >


= Already incorporated =

Coordinate Systems

    * What kind of coordinate systems are used?
      < http://www.nmr.mgh.harvard.edu/%7Etosa/#coords >

Low-res vs. high-res vertex positions

    * What is the value of a lowres vertex position given a highres
      vertex position? < http://www.nmr.mgh.harvard.edu/%7Etosa/#surfras >

Direction cosines

    * How is the direction cosine information obtained?
      < http://www.nmr.mgh.harvard.edu/%7Etosa/#dcos >


DICOM file format info
Line 90: Line 83:
    * How can I see a *DICOM functional image*?
      < http://www.nmr.mgh.harvard.edu/%7Etosa/#dicom >
    * How can I get the *image position/orientation of a DICOM file*?

Medical Image Formats info.

    * FAQ on Medical Image Format
      < http://www.nmr.mgh.harvard.edu/%7Etosa/#imageformat >

Ftp access

    * Ftp access for sending data and receiving binaries from us?
      < http://www.nmr.mgh.harvard.edu/%7Etosa/#ftp >
Line 99: Line 100:
Medical Image Formats info. PBS (Not relevant to Documentation Wiki)
Line 101: Line 102:
    * FAQ on Medical Image Format
      < http://www.nmr.mgh.harvard.edu/%7Etosa/#imageformat >
    * How can I use the batch queuing system *PBS* on seychelles?
      < http://www.nmr.mgh.harvard.edu/%7Etosa/#PBS >
    * How can I hold the queue until some queues finish?
Line 104: Line 106:
DICOM file format info
Line 105: Line 108:
= Already incorporated =     * How can I get the *image position/orientation of a DICOM file*?

Tkmedit and talairach coordinates

    * Why tksurfer shows non-unit talairach even though talairach.xfm is
      a unit matrix? < http://www.nmr.mgh.harvard.edu/%7Etosa/#tksurfertal >

Needs to be incorporated

Segmented volume

Template Atlas

File name extensions

Talairach transformed image

Data formats in lh/rh.sulc.

Cortical parcellation

Subcortical segmentation atlas creation

Using the subcortical segmentation to create automatic segmentation

Defacing a subject

Monkey brain processing

DICOM file format info

Already incorporated

Coordinate Systems

Low-res vs. high-res vertex positions

Direction cosines

DICOM file format info

Medical Image Formats info.

Ftp access

CVS remotely

PBS (Not relevant to Documentation Wiki)

DICOM file format info

  • How can I get the *image position/orientation of a DICOM file*?

Tkmedit and talairach coordinates

TosasFaq (last edited 2008-04-29 11:45:32 by localhost)