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= FreeSurfer Tutorials = In order to run any of the freesurfer tutorials you must have valid freesurfer installation on your machine, and a local copy of the [[tutorial data|FsTutorial/Data]]. Basics: *[[FsTutorial/OutputData_freeview|Intro to FreeSurfer Output]] *[[FsTutorial/TroubleshootingData|Troubleshooting FreeSurfer Output]] *[[FsTutorial/GroupAnalysis|Group Analysis via command-line]] *[[FsTutorial/QdecGroupAnalysis_freeview|Group Analysis via GUI]] *[[FsTutorial/AnatomicalROI|ROI Analysis]] *[[FsTutorial/MultiModal_freeview|Multimodal Analysis]] Specialized topics: * [[FsTutorial/LongitudinalTutorial_freeview|Longitudinal Processing, Edits and Post-Processing]] * [[FsTutorial/Diffusion|Diffusion Analysis]] * [[FsTutorial/Tracula|Tracula Analysis]] * [[FsFastTutorial|FS-Fast, fMRI Analysis]] * [[FsTutorial/FslFeatFreeSurfer|FSL-FreeSurfer integration]] Old versions of tutorials which use tkmedit or tksurfer (no longer updated as of May 2014): *[[FsTutorial/OutputData_tktools|Intro to FreeSurfer Output]] *[[FsTutorial/GroupAnalysis_tktools|Group Analysis via command-line]] *[[FsTutorial/QdecGroupAnalysis_tktools|Group Analysis via GUI]] *[[FsTutorial/AnatomicalROI_tktools|ROI Analysis]] *[[FsTutorial/MultiModal_tktools|Multimodal Analysis]] *[[FsTutorial/LongitudinalTutorial_tktools|Longitudinal Processing, Edits and Post-Processing]] |
FreeSurfer Tutorials
In order to run any of the freesurfer tutorials you must have valid freesurfer installation on your machine, and a local copy of the FsTutorial/Data.
Basics:
Specialized topics:
Old versions of tutorials which use tkmedit or tksurfer (no longer updated as of May 2014):