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| == How to Use == | '''Index''' [[Table of Contents(2)]] == How to Use == Usage: ./runProject.sh <Patient File> <OPTION: DTI> DTI is an option that allows more metrics about the FA values to be outputted, however the required files must be in the proper location. Check file requirements below. === File Requirements === Requires a subject's file to look like this: EXAMPLES OF THE FILE SYSTEM For DTI, the folder must look like this: EXAMPLES OF THE DTI FILE ''''' Please note that the file names are case sensitive for the surface and volumes ''''' |
U-Shape Bundle Analysis
Note: all of the source code can be found on the "dmri" branch on the Freesurfer Github page. The link can be found here: https://github.com/freesurfer/freesurfer/tree/dmri/anatomicuts
Index Table of Contents(2)
How to Use
Usage:
/runProject.sh <Patient File> <OPTION: DTI>
DTI is an option that allows more metrics about the FA values to be outputted, however the required files must be in the proper location. Check file requirements below.
File Requirements
Requires a subject's file to look like this:
EXAMPLES OF THE FILE SYSTEM
For DTI, the folder must look like this:
EXAMPLES OF THE DTI FILE
Please note that the file names are case sensitive for the surface and volumes