It usual to have many FreeSurfer recon-all commands to process multiple datasets.
This procedure helps to automate this:
cd your_study_group_data SETENV SUBJECTS_DIR $PWD foreach i (*) echo $i recon-all -subjid $i -all end
Wait some days...
It usual to have many FreeSurfer recon-all commands to process multiple datasets.
This procedure helps to automate this:
cd your_study_group_data SETENV SUBJECTS_DIR $PWD foreach i (*) echo $i recon-all -subjid $i -all end
Wait some days...