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| = THIS PAGE HAS BEEN MOVED TO SHAREPOINT! = Please refer to this site/make edits here for the most updated information: https://partnershealthcare.sharepoint.com/sites/LCN/SitePages/FS-Version-1.aspx ---- <<BR>> <<BR>> <<BR>> |
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| Data and scripts are available to allow prediction of location V1 on a Freesurfer subject based on a probabilistic atlas. See the paper for details, and the README link for instructions on how to install the data (V1_average-1.1.tgz). | * [[https://surfer.nmr.mgh.harvard.edu/ftp/articles/hinds2008accurate.pdf|Accurate prediction of V1 location from cortical folds in a surface coordinate system]], Hinds, O.P., N. Rajendran, J.R. Polimeni, J.C. Augustinack, G. Wiggins, L.L. Wald, H.D. Rosas, A. Potthast, E.L. Schwartz and B. Fischl (2008). NeuroImage 39:1585-1599. |
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| * [[https://surfer.nmr.mgh.harvard.edu/ftp/articles/ba_maps2007.pdf|Cortical Folding Patterns and Predicting Cytoarchitecture]], Fischl, B., N. Rajendran, E. Busa, J. Augustinack, O. Hinds, B.T.T. Yeo, H. Mohlberg, K. Amunts, K. Zilles, (2007). Cerebral Cortex 2007, doi:10.1093/cercor/bhm225. * [[ftp://surfer.nmr.mgh.harvard.edu/pub/dist/V1_average.README.txt|README]] * [[ftp://surfer.nmr.mgh.harvard.edu/pub/dist/V1_average-1.1.tgz|V1_average-1.1.tgz]] * [[ftp://surfer.nmr.mgh.harvard.edu/pub/dist/V1_average.1.0.tgz|V1_average.1.0.tgz]] * See also BrodmannAreaMaps |
To create these label: {{{ recon-all -s subjid -label-v1 }}} This will output: * <subjid>/label/?h.v1.prob.label - contains stat values * <subjid>/label/?h.v1.predict.label - thresholded Note: This requires the subject found in $FREESURFER_HOME/subjects/V1_average to be located (symlinked or copied) in your $SUBJECTS_DIR. See also BrodmannAreaMaps. Note: To adjust the display to account for the probabilities in the label in tksurfer, try going to Tools->Label->Threshold Selected Label, then choose a threshold between 0 and 1. |
THIS PAGE HAS BEEN MOVED TO SHAREPOINT!
Please refer to this site/make edits here for the most updated information: https://partnershealthcare.sharepoint.com/sites/LCN/SitePages/FS-Version-1.aspx
V1 Atlas
Accurate prediction of V1 location from cortical folds in a surface coordinate system, Hinds, O.P., N. Rajendran, J.R. Polimeni, J.C. Augustinack, G. Wiggins, L.L. Wald, H.D. Rosas, A. Potthast, E.L. Schwartz and B. Fischl (2008). NeuroImage 39:1585-1599.
To create these label:
recon-all -s subjid -label-v1
This will output:
<subjid>/label/?h.v1.prob.label - contains stat values
<subjid>/label/?h.v1.predict.label - thresholded
Note: This requires the subject found in $FREESURFER_HOME/subjects/V1_average to be located (symlinked or copied) in your $SUBJECTS_DIR.
See also BrodmannAreaMaps.
Note: To adjust the display to account for the probabilities in the label in tksurfer, try going to Tools->Label->Threshold Selected Label, then choose a threshold between 0 and 1.