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Name

autoreg-sess

Synopsis

autoreg-sess -s [subjectname] -d [subjectdirectory]

Arguments

Positional Arguments

none

Required Flagged Arguments

-s sessid or -sf sessidfile

subject name or name of text file containing list of subjects

-d srchdir or -df srchdirfile

name of subject directory

Optional Flagged Arguments

-fsd dir

functional subdirectory (bold)

-asd dir

anatomical subdirectory (3danat)

-anatrun run

anatomical run to use for aligment (auto)

-sessanat

register to same session anatomical

-unmask mask

set unix file permission mask

-version

print version and exit

Outputs

register.dat

in each subject's bold directory

Description

autoreg-sess works in two stages. First, it aligns the same-session anatomical to the FreeSurfer anatomical. Next, it computes the registration from the functional to the same-session anatomical based only on the geometry of the acquisition. It then concatenates the two to give the registration from the functional to the FreeSurfer anatomical. Because the second func-anat reg is based only on header information, an movement between the functional and the same-session anatomical will not be compensated for.

Examples

Example 1

autoreg-sess -s subject1 -d . (if in subject_dir)

description

Example 2

command foo -i f -o out -f fvalue

description

Bugs

None

See Also

["tkregister-sess"], ["tkregister2"]

Links

FreeSurfer, FsFast

Methods Description

description
description

References

["References/Lastname###"]

Reporting Bugs

Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>

Author/s

DougGreve