Index

Name

fcseed-sess

Computes seeds (regressors) that can be used for functional connectivity analysis or for use as nuisance regressors.

NOTE: this program is still experimental. Use at your own risk!

Synopsis

fcseed-sess -segid <SegID#> -fillthresh 0.5 -s bert -mean

Arguments

Required Flagged Arguments

-sf sessidfile

supply text file with list of subjects

-df srchdirfile

search in this dir for subjects

-s sessid

single subject processing

-d srchdir

search in this dir for single subject

-fsd fsdir name

dir name for location of bold data & analyses within subjectdir

-flag1 arg1

brief description

detailed description (eg, help file information)

-flag2 arg2

brief description

detailed description (eg, help file information)

Optional Flagged Arguments

-flag3 arg3

brief description

detailed description (eg, help file information)

-flag4 arg4

brief description

detailed description (eg, help file information)

Outputs

volume1

description

volume2

description

Description

description

Examples

Example 1

command foo -i f -o out

description

Example 2

command foo -i f -o out -f fvalue

description

Bugs

None

See Also

othercommand1, othercommand2

Links

FreeSurfer, FsFast

Methods Description

description
description

References

References/Lastname###

Reporting Bugs

Report bugs to < analysis-bugs@nmr.mgh.harvard.edu >

Author/s

JaneSmith