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| This page is targeted at those who wish to develop and build the freesurfer source code on their Linux platform. These instructions have been tested for CentOS6 x86_64 and Ubuntu 12.04 i386 platforms. | This page is targeted at those who wish to develop and build the freesurfer source code on their Linux platform. These instructions have been tested for CentOS6 x86_64. |
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| === Get the build tools (Ubuntu plantforms only) === If you are on an Ubuntu machine you will have to install the following packages: |
/* === Get the build tools (Ubuntu plantforms only) === If you are on an Ubuntu machine you will have to install the following packages:{{{sudo apt-get install autoconf libtool gfortran cvs}}} */ |
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| {{{ sudo apt-get install autoconf libtool gfortran cvs }}} === Get the Libraries === |
=== Download and Install the Libraries === |
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| '''''On 64bit systems''''' | /* '''''On 64bit systems''''' */ |
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| '''''On 32bit systems''''' {{{ wget ftp://surfer.nmr.mgh.harvard.edu/pub/dist/fs_supportlibs/prebuilt/centos6_x86_64/centos6-x86_64-packages.tar.gz mkdir -p /usr/pubsw/packages tar -C /usr/pubsw/packages -xzvf centos6-x86_64-packages.tar.gz }}} |
/* '''''On 32bit systems'''''{{{wget ftp://surfer.nmr.mgh.harvard.edu/pub/dist/fs_supportlibs/prebuilt/centos6_x86_64/centos6-x86_64-packages.tar.gz mkdir -p /usr/pubsw/packages tar -C /usr/pubsw/packages -xzvf centos6-x86_64-packages.tar.gz }}} */ |
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| Determine the location you want Freesurfer to be installed. For example, in case case we will assume the user wants freesurfer to be installed in {{{/Users/USER/freesurfer}}}. Type the following commands in the top-level Freesurfer directory (the directory that contains configure.in and all the mri_* and mris_* directories.) | Determine the location you want Freesurfer to be installed. For example, in case case we will assume the user wants freesurfer to be installed in {{{/home/USER/freesurfer}}}. Type the following commands in the top-level Freesurfer directory (the directory that contains configure.in and all the mri_* and mris_* directories.) |
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| --prefix=/Users/USER/freesurfer \ | --prefix=/home/USER/freesurfer |
This page is targeted at those who wish to develop and build the freesurfer source code on their Linux platform. These instructions have been tested for CentOS6 x86_64.
1. Get the Source Code
If you already have a working local copy of the CVS repository then you can skip this step.
# Local CVS access: export CVSROOT=/space/repo/1/dev cvs checkout -P dev # Or for remote access: export CVSROOT=:ext:USER@door.nmr.mgh.harvard.edu:/space/repo/1/dev cvs checkout -P dev
Or, you can get readonly CVS access to the source code by following the directions on this page:
2. Download and Install the Libraries
Use the following commands to download and install the prepackaged bundle of open-source libraries required for building Freesurfer:
wget ftp://surfer.nmr.mgh.harvard.edu/pub/dist/fs_supportlibs/prebuilt/centos6_x86_64/centos6-x86_64-packages.tar.gz mkdir -p /usr/pubsw/packages tar -C /usr/pubsw/packages -xzvf centos6-x86_64-packages.tar.gz
3. Setup, Configure, Make
Determine the location you want Freesurfer to be installed. For example, in case case we will assume the user wants freesurfer to be installed in /home/USER/freesurfer. Type the following commands in the top-level Freesurfer directory (the directory that contains configure.in and all the mri_* and mris_* directories.)
./setup_configure
./configure \
--prefix=/home/USER/freesurfer
make -j4
make installDone! Send your comments/questions/feedback to zkaufman@nmr.mgh.harvard.edu