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#pragma section-numbers on
'''Index'''

This page is targeted at those who wish to develop and build the freesurfer source code on their Mac OSX platform. These instructions have been tested for Mac 10.6 (Snow Leopard) and 10.7 (Lion).

<<TableOfContents(3)>>

=== Get the Source Code ===
''If you already have a working local copy of the CVS repository then you can ignore this step.''

Local CVS access:

{{{
export CVSROOT=/space/repo/1/dev
cvs checkout -P dev
}}}
Remote CVS access:

{{{
export CVSROOT=:ext:USER@door.nmr.mgh.harvard.edu:/space/repo/1/dev
cvs checkout -P dev
}}}

If you want the ''stable'' brach use the following command:
{{{
cvs checkout -P -r stable5 dev
}}}

=== Get the Libraries ===
''If you are at the NMR Center and already have {{{/usr/pubsw/packages}}} mounted on your system then you can skip this step.''

Freesurfer builds against a set of open-sourced libraries. Special bundles of this open-source code are available on the [[ftp://surfer.nmr.mgh.harvard.edu/pub/dist/fs_supportlibs/prebuilt|distribution site]]. Once you have downloaded the bundle, execute the following command to install them into the {{{/usr/pubsw/packages}}} directory:

{{{
mkdir -p /usr/pubsw/packages
tar -C /usr/pubsw/packages -xzvf DownLoadedFileName.tar.gz
}}}
'''''NOTE:''' You may install the open-sourced libraries into any directory you wish but it is best to install them into the {{{/usr/pubsw/packages}}} directory, as that is where Freesurfer setup script checks for its packages during its setup. If you choose to install in a different location than the onus will be on you to setup everything correctly during the '''configure''' phase. That is outside the scope of this document.''

=== Set Your Path ===
{{{
export PATH=/usr/pubsw/packages/autotools/bin:$PATH
}}}
=== Setup, Configure, Make ===
Determine the location you want Freesurfer to be installed. For example, in case case we will assume the user wants freesurfer to be installed in {{{/Users/zkaufman/freesurfer}}}. Type the following commands in the top-level Freesurfer directory (the directory that contains configure.in and all the mri_* and mris_* directories.)

If your on Mac OSX 10.6 (Snow Leopard):

{{{
./setup_configure
./configure \
      --prefix=/Users/zkaufman/freesurfer
make -j4
make install
}}}
If your on Mac OSX 10.7 (Lion):

{{{
./setup_configure
./configure \
      --prefix=/Users/zkaufman/freesurfer \
      --disable-GUI-build \
      --with-Mac32-GUIs
make -j4
make install
}}}
Done!

Send your comments/questions/feedback to zkaufman@nmr.mgh.harvard.edu