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⇤ ← Revision 64 as of 2015-06-26 17:43:16 →
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Editor: ZekeKaufman
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← Revision 113 as of 2019-03-27 13:49:50 → ⇥
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Editor: AndrewHoopes
Comment: Documentation has been consolidated in the Build Guide
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#pragma section-numbers on
This page is targeted at those who wish to develop and build the freesurfer source code on their OSX platform. These instructions have been tested for OS X 10.7, 10.9, and 10.10 (Lion, Mavericks, and Yosemite).
<<TableOfContents(3)>>
=== Get the Source Code ===
''If you already have a working local copy of the CVS repository then you can skip this step.''
{{{
# Local CVS access:
$> export CVSROOT=/space/repo/1/dev
$> cvs checkout -P dev

# Or for remote access:
$> export CVSROOT=:ext:USER@door.nmr.mgh.harvard.edu:/space/repo/1/dev
$> cvs checkout -P dev
}}}
Or, you can get readonly CVS access to the source code by following the directions [[https://surfer.nmr.mgh.harvard.edu/fswiki/ReadOnlyCVS|on this page]]:

=== Download and Install the Libraries ===

In order to build Freesurfer, the following prerequisite software will need to be downloaded and installed on your OSX system:

 * [[https://download.qt.io/archive/qt/4.7/qt-mac-opensource-4.7.4.dmg|Qt 4.7.4]]
   * ''After you install Qt, you must delete line 320 from the file'' {{{/Library/Frameworks/QtCore.framework/Headers/qglobal.h}}}'', the line that says "#warning "This version of Mac OS X is unsupported""''
 * [[http://gcc.gnu.org/wiki/GFortranBinaries#MacOS|gfortran 4.8.2]]
 * [[https://www.macports.org/install.php|MacPorts]] (for installing gcc)
 * [[http://xquartz.macosforge.org/downloads/SL/XQuartz-2.7.5.dmg|XQuartz 2.7.5]] (OSX versions 10.9 and lower) or [[http://xquartz.macosforge.org/downloads/SL/XQuartz-2.7.6.dmg|XQuartz 2.7.6]] (OSX versions 10.10 and higher)

Install Xcode Command Line Tools:

{{{
$> xcode-select --install
}}}

Install gcc v4.4.7:

{{{
$> sudo port install gcc44
$> cd /opt/local/bin
$> sudo ln -s gcc-mp-4.4 gcc
$> sudo ln -s g++-mp-4.4 g++
}}}

Download and install the prebuilt package of open-source libraries:

{{{
$> curl -O ftp://surfer.nmr.mgh.harvard.edu/pub/dist/fs_supportlibs/prebuilt/mountain_lion/MacOSX_Lion_Packages.tar.gz
$> sudo mkdir -p /usr/pubsw/packages
$> sudo tar -C /usr/pubsw/packages -xzvf MacOSX_Lion_Packages.tar.gz
}}}


=== Set Your Path ===
{{{
$> export PATH=/usr/pubsw/packages/autotools/bin:$PATH
}}}

=== Setup, Configure, Make ===
Determine the location you want Freesurfer to be installed. For example, in case case we will assume the user wants freesurfer to be installed in {{{/User/USER/freesurfer}}}. Type the following commands in the top-level Freesurfer directory (the directory that contains configure.in and all the mri_* and mris_* directories.)
{{{
$> ./setup_configure
$> ./configure --prefix=/User/USER/freesurfer
$> make -j4
$> make install
}}}
Done!
Send your comments/questions/feedback to zkaufman@nmr.mgh.harvard.edu