Index TableOfContents
Name
func2sph-sess - resamples functional data from native space to spherical space
Synopsis
func2sph-sess -analysis (analysisname) -s (subjecname) or -sf (subjectfilename) -d (subjects_dir)
Arguments
Positional Arguments
none |
Required Flagged Arguments
-analysis analysisname |
session-level functional analysis name |
-sf sessidfile ... |
|
-df srchdirfile ... |
Optional Flagged Arguments
-hemi hemilist |
lh, rh, or <lh rh> |
-surf surfacename |
resample onto surfacename <white> |
-surfreg surfacename |
use surfacename for registration <sphere.reg> |
-trgsubject subjectname |
resample onto subject instead of ico |
-icoorder order |
icosahedron order 0-7 <7> |
-mapmethod method |
<nnfr> or nnf |
-float2int method |
tkreg, floor, round |
-projfrac fraction |
resample fraction of thickness into gray |
-spacedir |
save data to spacedir (sph) |
-umask umask |
set unix file permission mask |
-version |
print version and exit |
-fwhm fwhm |
smooth the volume before resampling (good with -synth) |
-synth |
synthesize volume with white gaussian noise |
Outputs
volume1 |
description |
volume2 |
description |
Description
Spatial normalization is the process through which two or more subjects' brains are aligned or registered based on anatomical information. This is so that when the subjects' functional data are averaged together on a voxel-by-voxel basis, the voxels represent the same anatomical location in each subject.
Examples
Example 1
command foo -i f -o out
description
Example 2
command foo -i f -o out -f fvalue
description
Bugs
None
See Also
["othercommand1"], ["othercommand2"]
Links
Methods Description
References
["References/Lastname###"]
Reporting Bugs
Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>
Author/s
Doug Greve, PhD