Name

funcroi-config

Synopsis

Arguments

-roi roiconfig
-force	Delete any existing roiconfig files

Define the anatomical label

-label labelname
-annot annotname labelname	(hemi.annotname.annot)
-seg segvol segid
-fillthresh fillthresh

Define the functional constraint

-analysis analysisname	Name of analysis configuration
-contrast contrastname
-thresh threshhold
-sign sign	abs, pos, neg
-map map	Default is sig
-frame frameno	Frame within contrast sig (default is 0)

Description

Configures a region-of-interest (ROI) based on subject-specific anatomical and, possibly, functional definitions. This does not perform the analysis; it only configures the parameters needed to define the ROI for later analysis with funcroi-sess and/or funcroi-table-sess. The output is a simple text file (the configuration).

Examples

Example 1

Bugs

None

Links

FsFast

Reporting Bugs

Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>

-  ⇤ ← Revision 1 as of 2017-12-19 11:37:24 → 
  Size: 419
  Editor: MorganFogarty
  Comment:
+   ← Revision 2 as of 2017-12-19 11:44:08 → ⇥
  Size: 1194
  Editor: MorganFogarty
  Comment:
-Deletions are marked like this.
+Additions are marked like this.
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+funcroi-config
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-== Positional Arguments ==
None
+||-roi roiconfig || ||
||-force || Delete any existing roiconfig files ||
== Define the anatomical label ==
||-label labelname || ||
||-annot annotname labelname || (hemi.annotname.annot) ||
||-seg segvol segid || ||
||-fillthresh fillthresh || ||
-Line 12:
+Line 18:
-== Required Flagged Arguments ==

== Optional Flagged Arguments ==

= Outputs =
+== Define the functional constraint ==
||-analysis analysisname || Name of analysis configuration ||
||-contrast contrastname || ||
||-thresh threshhold || ||
||-sign sign || abs, pos, neg ||
||-map map || Default is sig ||
||-frame frameno || Frame within contrast sig (default is 0) ||
-Line 19:
+Line 27:
+Configures a region-of-interest (ROI) based on subject-specific anatomical and, possibly, functional definitions. This does not perform the analysis; it only configures the parameters needed to define the ROI for later analysis with funcroi-sess and/or funcroi-table-sess. The output is a simple text file (the configuration).