| Deletions are marked like this. | Additions are marked like this. |
| Line 11: | Line 11: |
| inorm-sess -s [sessid] or -sf [sessidfile] -d [srchdir] or -df [srchdirfile] [<options>] | inorm-sess {-s [sessid] or -sf [sessidfile]} {-d [srchdir] or -df [srchdirfile]} [<options>] |
| Line 30: | Line 30: |
| -thresh threshold : fraction of global mean to separate brain and air |
-thresh [threshold] fraction of global mean to separate brain and air |
| Line 32: | Line 33: |
| -motioncor : inorm the motion corrected volumes |
-motioncor inorm the motion corrected volumes |
| Line 34: | Line 36: |
| -funcstem stem : stem of functional volume (default: f or fmc) |
-funcstem [stem] stem of functional volume (default: f or fmc) |
| Line 36: | Line 39: |
| -rlf runlistfile : | -rlf [runlistfile] |
| Line 38: | Line 41: |
| -umask umask : set unix file permission mask |
-umask [umask] set unix file permission mask |
| Line 40: | Line 44: |
| -version : print version and exit |
-version print version and exit |
| Line 49: | Line 54: |
|
= Description = description |
|
| Line 51: | Line 60: |
| command foo -i f -o out | inorm-sess foo -i f -o out |
| Line 58: | Line 67: |
| command foo -i f -o out -f fvalue | inorm-sess foo -i f -o out -f fvalue |
| Line 67: | Line 76: |
| JaneSmith | DougGreve |
| Line 72: | Line 81: |
|
= Description = description |
|
| Line 76: | Line 82: |
|
## For example: ["Belliveau1991"] NameYear |
References/NameYear |
| Line 83: | Line 88: |
|
## Suitable for cutting and pasting into publication. ## No WikiLinks should be used. |
|
| Line 91: | Line 94: |
|
## For example: CategoryFreeSurferCommandVolumeConversion Category``Stream``Function |
CategoryFsFastCommandIntensityNormalization |
Name
inorm-sess
Synopsis
inorm-sess {-s [sessid] or -sf [sessidfile]} {-d [srchdir] or -df [srchdirfile]} [<options>]
Positional Arguments
none
Required Flagged Arguments
-s [sessid] or -sf [sessidfile] description -d [srchdir] or -df [srchdirfile] description
Optional Flagged Arguments
-thresh [threshold] fraction of global mean to separate brain and air -motioncor inorm the motion corrected volumes -funcstem [stem] stem of functional volume (default: f or fmc) -rlf [runlistfile] -umask [umask] set unix file permission mask -version print version and exit
Outputs
volume1 - description volume2 - description
Description
description
Example 1
inorm-sess foo -i f -o out description
Example 2
inorm-sess foo -i f -o out -f fvalue description
See Also
["othercommand1"], ["othercommand2"]
Author/s
Links
References
References/NameYear
Reporting Bugs
Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>
Methods Description
description description
