Differences between revisions 4 and 5
Deletions are marked like this. Additions are marked like this.
Line 1: Line 1:
## If you are modifying this page please take a look at the
## CommandTemplate page and check that this page has the latest
## See HelpOnCommandTemplate for description of formatting
##
## Note:
If you are modifying this page please refer to the
## CommandTemplate page and confirm that this page has the latest
Line 6: Line 8:
{{{
inorm-sess
}}}
inorm-sess - intensity normalize data
Line 10: Line 10:
{{{
Line 12: Line 11:
}}}
Line 15: Line 13:
{{{
none
}}}
None
Line 20: Line 16:
{{{
-s [sessid] or -sf [sessidfile]
description

-d [srchdir] or -df [srchdirfile]
 
description
}}}
|| -s [sessid] or -sf [sessidfile]  || description ||
|| -d [srchdir] or -df [srchdirfile] || description ||
Line 29: Line 20:
{{{
-thresh [threshold]
 
fraction of global mean to separate brain and air

-motioncor
 
inorm the motion corrected volumes

-funcstem [stem]
 
stem of functional volume (default: f or fmc)

-rlf [runlistfile]

-umask [umask]
 
set unix file permission mask

-version
 
print version and exit
}}}
|| -thresh [threshold] || fraction of global mean to separate brain and air ||
|| -motioncor ||
inorm the motion corrected volumes ||
|| -funcstem [stem] ||
stem of functional volume (default: f or fmc) ||
|| -rlf [runlistfile] || ||
||
-umask [umask]      || set unix file permission mask to [umask] ||
||
-version            || print version and exit ||
Line 49: Line 28:
{{{      volume1 - description
volume2
- description
}}}
|| volume1 || description ||
Line 59: Line 34:
{{{
Line 63: Line 37:
}}}
Line 66: Line 39:
{{{
Line 70: Line 42:
}}}
Line 73: Line 44:
["othercommand1"], ["othercommand2"] ["spatialsmooth-sess"]
Line 79: Line 50:
FreeSurfer, FsFast FsFast

Name

inorm-sess - intensity normalize data

Synopsis

inorm-sess -s [sessid] or -sf [sessidfile] -d [srchdir] or -df [srchdirfile] [<options>]

Positional Arguments

None

Required Flagged Arguments

-s [sessid] or -sf [sessidfile]

description

-d [srchdir] or -df [srchdirfile]

description

Optional Flagged Arguments

-thresh [threshold]

fraction of global mean to separate brain and air

-motioncor

inorm the motion corrected volumes

-funcstem [stem]

stem of functional volume (default: f or fmc)

-rlf [runlistfile]

-umask [umask]

set unix file permission mask to [umask]

-version

print version and exit

Outputs

volume1

description

Description

description

Example 1

inorm-sess foo -i f -o out

description

Example 2

inorm-sess foo -i f -o out -f fvalue

description

See Also

["spatialsmooth-sess"]

Author/s

DougGreve

Links

FsFast

References

References/NameYear

Reporting Bugs

Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>

Methods Description

description
description

Category

CategoryFsFastCommandIntensityNormalization

inorm-sess (last edited 2008-04-29 11:45:34 by localhost)