| Deletions are marked like this. | Additions are marked like this. |
| Line 1: | Line 1: |
|
## If you are modifying this page please take a look at the ## CommandTemplate page and check that this page has the latest |
## See HelpOnCommandTemplate for description of formatting ## ## Note: If you are modifying this page please refer to the ## CommandTemplate page and confirm that this page has the latest |
| Line 6: | Line 8: |
|
{{{ inorm-sess }}} |
inorm-sess - intensity normalize data |
| Line 10: | Line 10: |
| {{{ | |
| Line 12: | Line 11: |
| }}} | |
| Line 15: | Line 13: |
|
{{{ none }}} |
None |
| Line 20: | Line 16: |
|
{{{ -s [sessid] or -sf [sessidfile] description -d [srchdir] or -df [srchdirfile] description }}} |
|| -s [sessid] or -sf [sessidfile] || description || || -d [srchdir] or -df [srchdirfile] || description || |
| Line 29: | Line 20: |
|
{{{ -thresh [threshold] fraction of global mean to separate brain and air -motioncor inorm the motion corrected volumes -funcstem [stem] stem of functional volume (default: f or fmc) -rlf [runlistfile] -umask [umask] set unix file permission mask -version print version and exit }}} |
|| -thresh [threshold] || fraction of global mean to separate brain and air || || -motioncor || inorm the motion corrected volumes || || -funcstem [stem] || stem of functional volume (default: f or fmc) || || -rlf [runlistfile] || || || -umask [umask] || set unix file permission mask to [umask] || || -version || print version and exit || |
| Line 49: | Line 28: |
|
{{{ volume1 - description volume2 - description }}} |
|| volume1 || description || |
| Line 59: | Line 34: |
| {{{ | |
| Line 63: | Line 37: |
| }}} | |
| Line 66: | Line 39: |
| {{{ | |
| Line 70: | Line 42: |
| }}} | |
| Line 73: | Line 44: |
| ["othercommand1"], ["othercommand2"] | ["spatialsmooth-sess"] |
| Line 79: | Line 50: |
| FreeSurfer, FsFast | FsFast |
Name
inorm-sess - intensity normalize data
Synopsis
inorm-sess -s [sessid] or -sf [sessidfile] -d [srchdir] or -df [srchdirfile] [<options>]
Positional Arguments
None
Required Flagged Arguments
-s [sessid] or -sf [sessidfile] |
description |
-d [srchdir] or -df [srchdirfile] |
description |
Optional Flagged Arguments
-thresh [threshold] |
fraction of global mean to separate brain and air |
-motioncor |
inorm the motion corrected volumes |
-funcstem [stem] |
stem of functional volume (default: f or fmc) |
-rlf [runlistfile] |
|
-umask [umask] |
set unix file permission mask to [umask] |
-version |
print version and exit |
Outputs
volume1 |
description |
Description
description
Example 1
inorm-sess foo -i f -o out
description
Example 2
inorm-sess foo -i f -o out -f fvalue
description
See Also
["spatialsmooth-sess"]
Author/s
Links
References
References/NameYear
Reporting Bugs
Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>
Methods Description
description description
