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| mc-sess arg1 -i <arg2> -o <arg3> [<options>] | mc-sess {-s [sessid] or -sf [sessidfile]} {-d [srchdir] or -df [srchdirfile]} [<options>] |
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| arg1 description |
None |
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| -i <arg2> | -s [sessid] or -sf [sessidfile] |
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| -o <arg3> | -d [srchdir] or -df [srchdirfile] |
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| -f <fvalue> description description |
-method [mcmethod] afni |
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| -g <gvalue> description description |
-targnthrun [n] uses [nth] run as target default: [n]=1 -toff [m] [m] is target image offset -fstem [stem] stem of output motion-corrected volume (fmc) -fmcstem [stem] stem of output motion-corrected volume (fmc) -umask umask set unix file permission mask to [umask] -version print version and exit -rlf [runlistfile] only process those in the [runlist] file |
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| mc-sess foo -i f -o out | mc-sess -s grp1id -d grp1dir mc-sess using sess id and a search directory |
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| mc-sess foo -i f -o out -f fvalue | mc-sess -sf grp1sessfile -df grp1dirfile mc-sess using sess id file and search directory file |
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| ["othercommand1"], ["othercommand2"] | ["othercommand1"], ["othercommand2"] |
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| DougGreve | DougGreve |
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| FsFast, FsFastMotionCorrection, ["AFNI"] | FsFast, FsFastMotionCorrection, ["AFNI"] |
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| ## For example: ["Belliveau1991"] NameYear |
References/Cox1999 |
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| Report bugs to <analysis-bugs@nmr.mgh.harvard.edu> | Report bugs to <analysis-bugs@nmr.mgh.harvard.edu> = Methods Description = {{{ The images were then motion corrected using the AFNI motion correction tool (http://afni.nimh.nih.gov/afni/). }}} |
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| CategoryFsFastCommandsMotionCorrection | CategoryFsFastCommandsMotionCorrection |
Name
mc-sess - motion correction using AFNI
Synopsis
mc-sess {-s [sessid] or -sf [sessidfile]} {-d [srchdir] or -df [srchdirfile]} [<options>]
Positional Arguments
None
Required Flagged Arguments
-s [sessid] or -sf [sessidfile] description -d [srchdir] or -df [srchdirfile] description
Optional Flagged Arguments
-method [mcmethod] afni -targnthrun [n] uses [nth] run as target default: [n]=1 -toff [m] [m] is target image offset -fstem [stem] stem of output motion-corrected volume (fmc) -fmcstem [stem] stem of output motion-corrected volume (fmc) -umask umask set unix file permission mask to [umask] -version print version and exit -rlf [runlistfile] only process those in the [runlist] file
Outputs
volume1 - description volume2 - description
Example 1
mc-sess -s grp1id -d grp1dir mc-sess using sess id and a search directory
Example 2
mc-sess -sf grp1sessfile -df grp1dirfile mc-sess using sess id file and search directory file
See Also
["othercommand1"], ["othercommand2"]
Author
Links
FsFast, FsFastMotionCorrection, ["AFNI"]
References
References/Cox1999
Reporting Bugs
Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>
Methods Description
The images were then motion corrected using the AFNI motion correction tool (http://afni.nimh.nih.gov/afni/).