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| mc-sess -s [sessid] or -sf [sessidfile] -d [srchdir] or -df [srchdirfile] [<options>] | mc-sess {-s [sessid] or -sf [sessidfile]} {-d [srchdir] or -df [srchdirfile]} [<options>] |
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| -sf [sessidfile] | -s [sessid] or -sf [sessidfile] |
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| -df [srchdirfile] description -s [sessid] description -d [srchdir] |
-d [srchdir] or -df [srchdirfile] |
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| mc-sess -i f -o out | mc-sess -s grp1id -d grp1dir mc-sess using sess id and a search directory |
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| mc-sess -i f -o out -f fvalue | mc-sess -sf grp1sessfile -df grp1dirfile mc-sess using sess id file and search directory file |
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| ## For example: ["Belliveau1991"] NameYear |
References/Cox1999 |
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| description description |
The images were then motion corrected using the AFNI motion correction tool (http://afni.nimh.nih.gov/afni/). |
Name
mc-sess - motion correction using AFNI
Synopsis
mc-sess {-s [sessid] or -sf [sessidfile]} {-d [srchdir] or -df [srchdirfile]} [<options>]
Positional Arguments
None
Required Flagged Arguments
-s [sessid] or -sf [sessidfile] description -d [srchdir] or -df [srchdirfile] description
Optional Flagged Arguments
-method [mcmethod] afni -targnthrun [n] uses [nth] run as target default: [n]=1 -toff [m] [m] is target image offset -fstem [stem] stem of output motion-corrected volume (fmc) -fmcstem [stem] stem of output motion-corrected volume (fmc) -umask umask set unix file permission mask to [umask] -version print version and exit -rlf [runlistfile] only process those in the [runlist] file
Outputs
volume1 - description volume2 - description
Example 1
mc-sess -s grp1id -d grp1dir mc-sess using sess id and a search directory
Example 2
mc-sess -sf grp1sessfile -df grp1dirfile mc-sess using sess id file and search directory file
See Also
["othercommand1"], ["othercommand2"]
Author
Links
FsFast, FsFastMotionCorrection, ["AFNI"]
References
References/Cox1999
Reporting Bugs
Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>
Methods Description
The images were then motion corrected using the AFNI motion correction tool (http://afni.nimh.nih.gov/afni/).