Index TableOfContents
Name
mkcontrast-sess - creates a contrast matrix that is then used as input to test hypotheses.
Synopsis
mkcontrast-sess
Arguments
Positional Arguments
None
Required Flagged Arguments
None
Optional Flagged Arguments
-analysis analysisname (or use -an) |
name of session-level functional analysis |
Name of the analysis to create the contrast for. The analysis must have been defined by mkanalysis-sess. Also, selxavg-sess must have been run at least once. |
|| -contrast contrastname (or use -co) || contrast name || The name of the contrast. || The name of the contrast. This name is then used in later programes (eg, stxgrinder-sess). mkcontrast-sess will create a matlab file in the study analysis directory. This file will be called contrastname.mat. When stxgrinder-sess is run, it will create a subdirectory called contrastname under the analysis directory for each sessions.
-a a1 <-a a2 ...> |
positive contrast conditions |
These specify which conditions to use in the contrast, where 1, a2, c1, c2, etc, are the condition numbers as found in the paradigm file. The -a conditions will be weighted positively. The -c conditions will be weighted negatively. Eg, -a 2 -c 1 -c 3 will weight conditions 1 and 3 by -0.5 and condition 2 by +1. |
-c c1 <-c c2 ...> |
negative contrast conditions |
These specify which conditions to use in the contrast, where 1, a2, c1, c2, etc, are the condition numbers as found in the paradigm file. The -a conditions will be weighted positively. The -c conditions will be weighted negatively. Eg, -a 2 -c 1 -c 3 will weight conditions 1 and 3 by -0.5 and condition 2 by +1. |
-setwdelay |
specifying conditions to use in the contrast |
detailed description (eg, help file information) |
Outputs
volume1 |
description |
volume2 |
description |
Description
description
Examples
Example 1
command foo -i f -o out
description
Example 2
command foo -i f -o out -f fvalue
description
Bugs
None
See Also
["othercommand1"], ["othercommand2"]
Links
Methods Description
description description
References
["References/Lastname###"]
Reporting Bugs
Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>