|
Size: 1120
Comment:
|
← Revision 4 as of 2008-04-29 11:45:14 ⇥
Size: 1647
Comment: converted to 1.6 markup
|
| Deletions are marked like this. | Additions are marked like this. |
| Line 9: | Line 9: |
| [[Navigation(children)]] | <<Navigation(children)>> |
| Line 11: | Line 11: |
| [[TableOfContents]] | <<TableOfContents>> |
| Line 14: | Line 14: |
| mri_ca_normalize - ? | mri_ca_normalize - creates a normalized volume using the brain volume and an input gca file |
| Line 17: | Line 17: |
| mri_ca_normalize invol atlas xform outvol | mri_ca_normalize [<options>] <inbrain1> <inbrain2> ... <atlas> <transform file> <output1> <output2> ... |
| Line 21: | Line 21: |
| ||invol || input volume|| ||atlas ||atlas|| ||xform || tranform file || ||outvol || output volume|| |
||inbrain1 || input volume|| ||inbrain2 || input volume|| ||atlas ||atlas file in gca format|| ||xform || tranform file in lta format|| ||output1 || output volume|| ||output2 || output volume|| |
| Line 30: | Line 32: |
| None |
||-mask || specifies volume to use as mask || ||-p || specifies the percentage of likely wm to use as control points, the default setting is 50% || |
| Line 33: | Line 36: |
| || outvol || output volume || | || outvol || output volume in either mgh or mgz format || |
| Line 40: | Line 43: |
| ?? | mri_ca_normalize -mask -p 0.25 subject1/mri/brain subject1/mri/nu single_one.gca subject1/mri/transforms/talairach_one.lta subject1/mri/norm_one.mgh |
| Line 42: | Line 45: |
| == Example 2 == ?? |
|
| Line 49: | Line 50: |
| ["othercommand1"], ["othercommand2"] | [[othercommand1]], [[othercommand2]] |
| Line 60: | Line 61: |
| ["References/Lastname###"] | [[References/Lastname###]] |
Index
Contents
Name
mri_ca_normalize - creates a normalized volume using the brain volume and an input gca file
Synopsis
mri_ca_normalize [<options>] <inbrain1> <inbrain2> ... <atlas> <transform file> <output1> <output2> ...
Arguments
Positional Arguments
inbrain1 |
input volume |
inbrain2 |
input volume |
atlas |
atlas file in gca format |
xform |
tranform file in lta format |
output1 |
output volume |
output2 |
output volume |
Required Flagged Arguments
None
Optional Flagged Arguments
-mask |
specifies volume to use as mask |
-p |
specifies the percentage of likely wm to use as control points, the default setting is 50% |
Outputs
outvol |
output volume in either mgh or mgz format |
Description
description
Examples
Example 1
mri_ca_normalize -mask -p 0.25 subject1/mri/brain subject1/mri/nu single_one.gca subject1/mri/transforms/talairach_one.lta subject1/mri/norm_one.mgh
Bugs
None
See Also
Links
Methods Description
??
References
Reporting Bugs
Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>