Name

mri_ca_register - generates a multi-dimensional talairach transform from a gca file and talairach.lta file

Synopsis

mri_ca_register <invol> <template> <outvol>

Arguments

Positional Arguments

invol	input volume
template	template in gca format
outvol	output volume in m3d format

Required Flagged Arguments

None

Optional Flagged Arguments

-tol	defines convergence of registration
-mask	specifies volume to use as a mask
-T	transform in lta format
-level	defines how many surrounding voxels will be used in interpolations, default is 6
-ri	allows reading of multiple intensity normalization

Outputs

outvol

multidimensional transform in m3d format

Examples

Example 1

mri_ca_register -levels 6 -mask subject1/mri/brain -T subject1/mri/transforms/talairach_one.lta subject1/mri/norm_one.mgh single_one.gca subject1/mri/transforms/talairach_one.m3d

Example 2

mri_ca_register -tol 1 -mask subject1/mri/brain -T subject1/mri/transforms/talairach_multi.lta subject1/mri/norm_multi.mgh multi_one.gca subject1/mri/transforms/talairach_multi.m3d

Links

FreeSurfer, FsFast

Reporting Bugs

Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>

Author/s

BruceFischl

-  ⇤ ← Revision 1 as of 2004-08-23 15:30:03 → 
  Size: 1123
  Editor: MichaelOgrydziak
  Comment:
+   ← Revision 6 as of 2009-08-04 11:35:46 → ⇥
  Size: 1712
  Editor: AllisonStevens
  Comment:
-Deletions are marked like this.
+Additions are marked like this.
 Line 9:
+<<Navigation(children)>>
'''Index'''
<<TableOfContents>>
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-mri_ca_register - ?
+'''mri_ca_register''' - generates a multi-dimensional talairach transform from a gca file and talairach.lta file
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-mri_ca_register [in brain] [template] [output file name]
+mri_ca_register <invol> <template> <outvol>
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+Line 20:
-= Positional Arguments =
|| [in brain] || ? ||
|| [template] || ? ||
|| [output file name] || ? ||
+= Arguments =
== Positional Arguments ==
|| invol || input volume ||
|| template || template in gca format ||
|| outvol || output volume in m3d format ||
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+Line 26:
-= Required Flagged Arguments =
none
+== Required Flagged Arguments ==
None
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-= Optional Flagged Arguments =
none
+== Optional Flagged Arguments ==
|| -tol || defines convergence of registration ||
|| -mask || specifies volume to use as a mask ||
|| -T || transform in lta format ||
|| -level || defines how many surrounding voxels will be used in interpolations, default is 6 ||
|| -ri || allows reading of multiple intensity normalization ||
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+Line 37:
-|| output file name || ? ||

= Description =
description
+|| outvol  || multidimensional transform in m3d format ||
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+Line 41:
-command foo -i f -o out

description
+mri_ca_register -levels 6 -mask subject1/mri/brain -T subject1/mri/transforms/talairach_one.lta subject1/mri/norm_one.mgh single_one.gca subject1/mri/transforms/talairach_one.m3d
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-command foo -i f -o out -f fvalue

description

= Bugs =
None

= See Also =
["othercommand1"], ["othercommand2"]
+mri_ca_register -tol 1 -mask subject1/mri/brain -T subject1/mri/transforms/talairach_multi.lta subject1/mri/norm_multi.mgh multi_one.gca subject1/mri/transforms/talairach_multi.m3d
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-= Methods Description =
{{{
description
description
}}}

= References =
["References/Lastname###"]
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-JaneSmith
+BruceFischl