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| mri_ca_register - generates a multi-dimensional talairach transform from a gca file and talairach.lta file | '''mri_ca_register''' - generates a multi-dimensional talairach transform from a gca file and talairach.lta file |
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| || -ri || allows reading of multiple intensity normalization || | |
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= Description = description |
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| = Bugs = None = See Also = ["othercommand1"], ["othercommand2"] |
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[[http://www.nmr.mgh.harvard.edu/~fischl/reprints/sequence_independent_segmentation_reprint.pdf|Fischl et al. (2004) - See "Nonlinear transform" section]] |
Index
Contents
Name
mri_ca_register - generates a multi-dimensional talairach transform from a gca file and talairach.lta file
Synopsis
mri_ca_register <invol> <template> <outvol>
Arguments
Positional Arguments
invol |
input volume |
template |
template in gca format |
outvol |
output volume in m3d format |
Required Flagged Arguments
None
Optional Flagged Arguments
-tol |
defines convergence of registration |
-mask |
specifies volume to use as a mask |
-T |
transform in lta format |
-level |
defines how many surrounding voxels will be used in interpolations, default is 6 |
-ri |
allows reading of multiple intensity normalization |
Outputs
outvol |
multidimensional transform in m3d format |
Examples
Example 1
mri_ca_register -levels 6 -mask subject1/mri/brain -T subject1/mri/transforms/talairach_one.lta subject1/mri/norm_one.mgh single_one.gca subject1/mri/transforms/talairach_one.m3d
Example 2
mri_ca_register -tol 1 -mask subject1/mri/brain -T subject1/mri/transforms/talairach_multi.lta subject1/mri/norm_multi.mgh multi_one.gca subject1/mri/transforms/talairach_multi.m3d
Links
Methods Description
Fischl et al. (2004) - See "Nonlinear transform" section
Reporting Bugs
Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>