Results 1 - 12 of 12 results out of about 3772 pages. (0.92 seconds)

recon-all . . . 4 matches
...or inorm2, wm segmentation, or filling. If used, then aseg.presurf.mgz is not used in mri_fill and mri_normalize. In addition, mri_edit_wm_aseg is skipped. This flag is typically u...

34.9k - rev: 47 (current) last modified: 2017-12-08 18:23:09

FreeSurferFill . . . 4 matches
...This process uses the command [[mri_fill]] to create a binarized volume. The input is the mri/wm volume and the output is the mri/filled volume. First, the cutting planes are deter...

2.1k - rev: 9 (current) last modified: 2008-04-29 11:46:03

fill . . . 3 matches
...is binarized to 127. The input is mri/wm.mgz and the output is mri/filled.mgz. Calls mri_fill. If the cut fails, then seed points can be supplied (see -cc-crs, -pons-crs, -lh-crs,...

0.7k - rev: 1 (current) last modified: 2009-06-03 16:28:30

mri_normalize . . . 2 matches
... Outputs = || wm || wm volume of the cortical reconstruction is used as the input for mri_fill || = Description = Normalize the white matter, optionally based on control points. T...

3.6k - rev: 9 (current) last modified: 2018-01-03 17:31:02

OtherUsefulFlags . . . 2 matches
...|| ||<style="text-align:left;" |3>-[[fill]] ||wm.mgz ||<style="text-align:left;" |3>[[mri_fill]] -a ../scripts/ponscc.cut.log -xform transforms/talairach.lta -segmentation aseg.aut...

29.7k - rev: 135 (current) last modified: 2017-04-25 13:53:01

ReconAllTableStableV5.3 . . . 1 match
... ||<style="text-align: left;" |3>-[[fill]] ||wm.mgz ||<style="text-align: left;" |3>[[mri_fill]] -a ../scripts/ponscc.cut.log -xform transforms/talairach.lta -segmentation aseg.aut...

13.7k - rev: 3 (current) last modified: 2015-05-08 15:10:28

ReconAllTableStableV5.1 . . . 1 match
... ||<style="text-align: left;" |3>-[[fill]] ||wm.mgz ||<style="text-align: left;" |3>[[mri_fill]] -a ../scripts/ponscc.cut.log -xform transforms/talairach.lta -segmentation aseg.aut...

13.4k - rev: 7 (current) last modified: 2012-03-26 16:45:23

ReconAllTableStableV5 . . . 1 match
... ||<style="text-align: left;" |3>-[[fill]] ||wm.mgz ||<style="text-align: left;" |3>[[mri_fill]] -a ../scripts/ponscc.cut.log -xform transforms/talairach.lta -segmentation aseg.aut...

13.4k - rev: 3 (current) last modified: 2012-03-26 16:47:16

ReconAllStableTablev4 . . . 1 match
...z|| ||<|3(bgcolor='#FFFFE0'>-fill||<bgcolor='#E0E0FF'>wm.mgz||<|3(bgcolor='#E0E0FF'>[[mri_fill]] -a ../scripts/ponscc.cut.log -xform transforms/talairach.lta -segmentation aseg.aut...

15.1k - rev: 8 (current) last modified: 2012-03-26 16:47:44

ReconAllDevTable . . . 1 match
...|| ||<style="text-align:left;" |3>-[[fill]] ||wm.mgz ||<style="text-align:left;" |3>[[mri_fill]] -a ../scripts/ponscc.cut.log -xform transforms/talairach.lta -segmentation aseg.aut...

18.2k - rev: 277 (current) last modified: 2017-02-17 11:53:55

FreeSurferCommandsVolumeMisc . . . 1 match
...mri_ca_normalize]] * [[mri_ca_train]] * [[mri_diff]] * [[mri_em_register]] * [[mri_fill]] * [[mri_gdfglm]] * [[mri_head]] * [[mri_info]] * [[mri_label_volume]] * [...

0.7k - rev: 4 (current) last modified: 2008-04-29 11:45:58

FreeSurferCommands . . . 1 match
...ri_mask]] * [[mri_segment]] * [[mri_edit_wm_with_aseg]] * [[mri_pretess]] * [[mri_fill]] * [[mri_tessellate]] * [[mris_smooth]] * [[mris_inflate]] * [[mris_sphere]]...

1.7k - rev: 23 (current) last modified: 2011-09-19 15:19:48