Results 1 - 12 of 12 results out of about 3772 pages. (0.92 seconds)
- recon-all . . . 4 matches
- ...or inorm2, wm segmentation, or filling. If used, then aseg.presurf.mgz is not used in mri_fill and mri_normalize. In addition, mri_edit_wm_aseg is skipped. This flag is typically u...
- FreeSurferFill . . . 4 matches
- ...This process uses the command [[mri_fill]] to create a binarized volume. The input is the mri/wm volume and the output is the mri/filled volume. First, the cutting planes are deter...
- fill . . . 3 matches
- ...is binarized to 127. The input is mri/wm.mgz
and the output is mri/filled.mgz. Calls mri_fill. If the cut fails,
then seed points can be supplied (see -cc-crs, -pons-crs, -lh-crs,...
- mri_normalize . . . 2 matches
- ... Outputs =
|| wm || wm volume of the cortical reconstruction is used as the input for mri_fill ||
= Description =
Normalize the white matter, optionally based on control points. T...
- OtherUsefulFlags . . . 2 matches
- ...||
||<style="text-align:left;" |3>-[[fill]] ||wm.mgz ||<style="text-align:left;" |3>[[mri_fill]] -a ../scripts/ponscc.cut.log -xform transforms/talairach.lta -segmentation aseg.aut...
- ReconAllTableStableV5.3 . . . 1 match
- ...
||<style="text-align: left;" |3>-[[fill]] ||wm.mgz ||<style="text-align: left;" |3>[[mri_fill]] -a ../scripts/ponscc.cut.log -xform transforms/talairach.lta -segmentation aseg.aut...
- ReconAllTableStableV5.1 . . . 1 match
- ...
||<style="text-align: left;" |3>-[[fill]] ||wm.mgz ||<style="text-align: left;" |3>[[mri_fill]] -a ../scripts/ponscc.cut.log -xform transforms/talairach.lta -segmentation aseg.aut...
- ReconAllTableStableV5 . . . 1 match
- ...
||<style="text-align: left;" |3>-[[fill]] ||wm.mgz ||<style="text-align: left;" |3>[[mri_fill]] -a ../scripts/ponscc.cut.log -xform transforms/talairach.lta -segmentation aseg.aut...
- ReconAllStableTablev4 . . . 1 match
- ...z||
||<|3(bgcolor='#FFFFE0'>-fill||<bgcolor='#E0E0FF'>wm.mgz||<|3(bgcolor='#E0E0FF'>[[mri_fill]] -a ../scripts/ponscc.cut.log -xform transforms/talairach.lta -segmentation aseg.aut...
- ReconAllDevTable . . . 1 match
- ...||
||<style="text-align:left;" |3>-[[fill]] ||wm.mgz ||<style="text-align:left;" |3>[[mri_fill]] -a ../scripts/ponscc.cut.log -xform transforms/talairach.lta -segmentation aseg.aut...
- FreeSurferCommandsVolumeMisc . . . 1 match
- ...mri_ca_normalize]]
* [[mri_ca_train]]
* [[mri_diff]]
* [[mri_em_register]]
* [[mri_fill]]
* [[mri_gdfglm]]
* [[mri_head]]
* [[mri_info]]
* [[mri_label_volume]]
* [...
- FreeSurferCommands . . . 1 match
- ...ri_mask]]
* [[mri_segment]]
* [[mri_edit_wm_with_aseg]]
* [[mri_pretess]]
* [[mri_fill]]
* [[mri_tessellate]]
* [[mris_smooth]]
* [[mris_inflate]]
* [[mris_sphere]]...