Index
Contents
Name
mri_motion_correct2 - averages a number of volumes and performs MotionCorrection (reincarnate of mri_motion_correct)
Synopsis
mri_motion_correct -o outvol -i invol1 -i invol2 [<options>]
Arguments
Positional Arguments
outvol |
description |
invol1 |
description |
invol2 |
description |
Required Flagged Arguments
-o outvol -i invol1 -i invol2
Optional Flagged Arguments
-wild |
assume unmatched args are input files |
-tmpdir tmpdir |
directory for temporary files |
-nocleanup |
do not delete temporary files |
-umask umask |
set unix file permission mask |
-cm |
COR volumes conform to min voxel size |
-version |
print version and exit |
-debug |
print lots of stuff to screen |
Outputs
outvol |
averaged and motion corrected volume |
Description
description
Examples
Example 1
mri_motion_correct2 -o ../orig -i 002 -i 003
motion correct and average the 2 COR volumes and output to a COR volume in ../orig
Example 2
mri_motion_correct2 -cm -i 001.mgz -i 002.mgz -i 003.mgz -o ../orig.mgz
motion correct and average the 3 .mgz volumes, conform to min voxel size, and output to ../orig.mgz
Bugs
None
See Also
mri_motion_correct, mri_info, mri_convert, minctracc, mincresample, mincaverage
Links
Methods Description
??
References
Reporting Bugs
Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>