Differences between revisions 2 and 3

Name

mri_motion_correct - averages a number of volumes and corrects for motion

Synopsis

mri_motion_correct [outfile] [infile1] [infile2] [<options>]

[outfile]
  description

[infile1]
  description

[infile2]
  description

None

-?? [??]
  description
  description

orig - averaged and motion corrected volume

mri_motion_correct ../orig 002 003

mri_motion_correct is a minctracc wrapper for averaging ["COR"] volumes

-Deletions are marked like this.
+Additions are marked like this.
 Line 8:
-mri_motion_correct arg1 -i <arg2> -o <arg3> [<options>]
+mri_motion_correct [outfile] [infile1] [infile2] [<options>]
 Line 13:
-arg1
+[outfile]
 Line 15:
+[infile1]

  description



[infile2]
-Line 20:
+Line 25:
--i <arg2> 

  description

  description



-o <arg3>

  description

  description
+None
-Line 31:
+Line 30:
--f <fvalue>

  description

  description



-g <gvalue>
+-?? [??]
-Line 42:
+Line 37:
-volume1 - description

volume2 - description
+orig - averaged and motion corrected volume
-Line 48:
+Line 42:
-mri_motion_correct foo -i f -o out

}}}



= Example 2 =

{{{

mri_motion_correct foo -i f -o out -f fvalue
+mri_motion_correct ../orig 002 003
-Line 57:
+Line 46:
- ["othercommand1"]



 ["othercommand2"]
+ ["minctrac"]
-Line 65:
+Line 52:
- FreeSurfer
+ FreeSurfer, FsFast
-Line 74:
+Line 61:
+= Methods Description =

{{{

mri_motion_correct is a minctracc wrapper for averaging ["COR"] volumes

}}}