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| ## see dtrecon as an exmaple | ## See HelpOnCommandTemplate for description of formatting ## ## Note: If you are modifying this page please refer to the ## CommandTemplate page and confirm that this page has the latest ## CommandTemplate formatting <<Navigation(children)>> '''Index''' <<TableOfContents>> |
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| {{{ mri_motion_correct - averages a number of volumes and corrects for motion }}} |
mri_motion_correct - averages a number of volumes and performs MotionCorrection |
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| {{{ mri_motion_correct [outfile] [infile1] [infile2] [<options>] }}} |
mri_motion_correct outvol invol1 invol2 [<options>] |
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| = Positional Arguments = {{{ [outfile] description |
= Arguments = == Positional Arguments == || outvol || description || || invol1 || description || || invol2 || description || |
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| [infile1] description |
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| [infile2] description }}} |
== Required Flagged Arguments == None |
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| = Required Flagged Arguments = {{{ None }}} = Optional Flagged Arguments = {{{ -?? [??] description description }}} |
== Optional Flagged Arguments == ||-?? [??] || description || |
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| {{{ orig - averaged and motion corrected volume }}} |
|| orig || averaged and motion corrected volume || |
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| = Example 1 = {{{ |
= Description = description = Examples = == Example 1 == |
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| }}} | description = Bugs = None |
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| ["minctrac"] = Author = JaneSmith |
[[othercommand1]], [[othercommand2]] |
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| FreeSurfer, FsFast = References = ## For example: ["Belliveau1991"] ["References/NameYear"] = Reporting Bugs = Report bugs to <analysis-bugs@nmr.mgh.harvard.edu> |
FreeSurfer |
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| mri_motion_correct is a minctracc wrapper for averaging ["COR"] volumes | ?? |
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| = Category = ## For example: CategoryFreeSurferCommandVolumeConversion CategoryFreeSurferCommandMotionCorrection |
= References = [[References/Lastname###]] = Reporting Bugs = Report bugs to <analysis-bugs@nmr.mgh.harvard.edu> = Author/s = BruceFischl |
Index
Contents
Name
mri_motion_correct - averages a number of volumes and performs MotionCorrection
Synopsis
mri_motion_correct outvol invol1 invol2 [<options>]
Arguments
Positional Arguments
outvol |
description |
invol1 |
description |
invol2 |
description |
Required Flagged Arguments
None
Optional Flagged Arguments
-?? [??] |
description |
Outputs
orig |
averaged and motion corrected volume |
Description
description
Examples
Example 1
mri_motion_correct ../orig 002 003
description
Bugs
None
See Also
Links
Methods Description
??
References
Reporting Bugs
Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>