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| ## see dtrecon as an exmaple |
## See HelpOnCommandTemplate for description of formatting ## ## Note: If you are modifying this page please refer to the ## CommandTemplate page and confirm that this page has the latest ## CommandTemplate formatting |
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{{{ mri_motion_correct - averages a number of volumes and corrects for motion }}} |
mri_motion_correct - averages a number of volumes and performs MotionCorrection |
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{{{ [outfile] description |
|| [outfile] || description || || [infile1] || description || || [infile2] || description || |
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[infile1] description [infile2] description }}} |
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{{{ -?? [??] description description }}} |
||-?? [??] || description || |
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{{{ orig - averaged and motion corrected volume }}} |
|| orig || averaged and motion corrected volume || = Description = description |
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description |
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| ["minctrac"] | ["othercommand1"], ["othercommand2"] |
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= Author = JaneSmith |
= Author/s = BruceFischl |
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| FreeSurfer, FsFast | FreeSurfer |
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## For example: ["Belliveau1991"] ["References/NameYear"] = Description = mri_motion_correct is a ["minctracc"] wrapper for averaging ["COR"] volumes |
["References/Lastname###"] |
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{{{ description description }}} |
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## For example: CategoryFreeSurferCommandVolumeConversion CategoryFreeSurferCommandMotionCorrection |
CategoryFreeSurferCommandsMotionCorrection |
Name
mri_motion_correct - averages a number of volumes and performs MotionCorrection
Synopsis
mri_motion_correct [outfile] [infile1] [infile2] [<options>]
Positional Arguments
[outfile] |
description |
[infile1] |
description |
[infile2] |
description |
Required Flagged Arguments
None
Optional Flagged Arguments
-?? [??] |
description |
Outputs
orig |
averaged and motion corrected volume |
Description
description
Example 1
mri_motion_correct ../orig 002 003
description
See Also
["othercommand1"], ["othercommand2"]
Author/s
Links
References
["References/Lastname###"]
Reporting Bugs
Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>
Methods Description
description description