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## see dtrecon as an exmaple
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 mri_segment - segments the white matter (based on voxel value) out of the brain volume to produce the wm volume  
{{{
mri_segment - segments the white matter (based on voxel value) to produce the wm volume
}}}
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 command argA argB -flag1 <arg1> -flag2 <arg2> -flag3 <arg3> {{{
mri_segment arg1 -i <arg2> -o <arg3> [<options>]
}}}
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 argA

 Description

argB

 D
escription
{{{
arg1
  description
  description
}}}
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 -flag1 <arg1> {{{
-i <arg2>
  description
  description
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 Description

- flag2 <arg2>

 D
escription
-o <arg3>
  d
escription
  description
}}}
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{{{
-f <fvalue>
  description
  description
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 -flag3 <arg3>

Description.
-g <gvalue>
  description
  description
}}}
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 file1

Description

 fi
le2

Description
{{{      volume1 - description
volume2 - description
}}}
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 command argA argB -flag1 foo -flag2 goo

 Description
{{{
mri_segment foo -i f -o out
}}}
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 command argA argB -flag1 foo -flag2 goo -flag3 hoo

 Description
{{{
mri_segment foo -i f -o out -f fvalue
}}}
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 ["command2"]  ["othercommand1"]
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 ["command3"]  ["othercommand2"]
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 Command``Guide  FreeSurfer
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 NameYear  ["References/NameYear"]
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 Report bugs to <>  Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>

Name

mri_segment - segments the white matter (based on voxel value) to produce the wm volume

Synopsis

mri_segment arg1 -i <arg2> -o <arg3> [<options>]

Positional Arguments

arg1
  description
  description

Required Flagged Arguments

-i <arg2> 
  description
  description

-o <arg3>
  description
  description

Optional Flagged Arguments

-f <fvalue>
  description
  description

-g <gvalue>
  description
  description

Outputs

volume1 - description
volume2 - description

Example 1

mri_segment foo -i f -o out

Example 2

mri_segment foo -i f -o out -f fvalue

See Also

  • ["othercommand1"] ["othercommand2"]

Author

Links

References

  • ["References/NameYear"]

Reporting Bugs

Category

mri_segment (last edited 2021-04-20 16:13:19 by AndrewHoopes)