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| ## see dtrecon as an exmaple |
## See HelpOnCommandTemplate for description of formatting ## ## Note: If you are modifying this page please refer to the ## CommandTemplate page and confirm that this page has the latest ## CommandTemplate formatting |
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| {{{ | |
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{{{ mri_segment arg1 -i <arg2> -o <arg3> [<options>] }}} |
mri_segment [argA] -flag1 [arg2] -flag2 [arg3] [<options>] |
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{{{ arg1 description description }}} |
|| [argA] || description || |
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{{{ -i <arg2> description description -o <arg3> description description }}} |
|| -flag1 [arg1] || description || || -flag2 [arg2] || description || |
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{{{ -f <fvalue> description description |
|| -flag3 [arg3] || description || || -flag4 [arg4] || description || = Outputs = || volume1 || description || || volume2 || description || |
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-g <gvalue> description description }}} = Outputs = {{{ volume1 - description volume2 - description }}} |
= Description = description |
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{{{ mri_segment foo -i f -o out }}} |
command foo -i f -o out description |
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{{{ mri_segment foo -i f -o out -f fvalue }}} |
command foo -i f -o out -f fvalue description |
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| = Author = | = Author/s = |
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| FreeSurfer | FreeSurfer, FsFast |
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## For example: ["Belliveau1991"] ["References/NameYear"] |
["References/Lastname###"] |
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= Methods Description = {{{ description description }}} |
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## For example: CategoryFreeSurferCommandVolumeConversion CategoryFreeSurferCommandSegmentation |
CategoryFreeSurferCommandsSegmenation |
Name
mri_segment - segments the white matter (based on voxel value) to produce the wm volume
Synopsis
mri_segment [argA] -flag1 [arg2] -flag2 [arg3] [<options>]
Positional Arguments
[argA] |
description |
Required Flagged Arguments
-flag1 [arg1] |
description |
-flag2 [arg2] |
description |
Optional Flagged Arguments
-flag3 [arg3] |
description |
-flag4 [arg4] |
description |
Outputs
volume1 |
description |
volume2 |
description |
Description
description
Example 1
command foo -i f -o out
description
Example 2
command foo -i f -o out -f fvalue
description
See Also
["othercommand1"], ["othercommand2"]
Author/s
Links
References
["References/Lastname###"]
Reporting Bugs
Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>
Methods Description
description description