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| mri_tessellate [<options>] [input volume] [label-value] [output surface] | mri_tessellate [options] <invol> <labelvalue> <outsurf> |
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| = Positional Arguments = || [input volume] || COR, .mgh, or .mgz volume || || [label-value] || integer, if input is filled volume, 127 is rh, 255 is lh || || [output surface] || binary surface of the tessellation || |
= Arguments = == Positional Arguments == || <invol> || input volume || || <labelvalue> || integer, if input is filled volume, 127 is rh, 255 is lh || || <outsurf> || binary surface of the tessellation || |
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| == Required Flagged Arguments == none |
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| = Required Flagged Arguments = None = Optional Flagged Arguments = |
== Optional Flagged Arguments == |
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| || [output surface] || surface file, typically ?h.orig || | || <outsurf> || surface file, typically ?h.orig || |
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| description | |
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| = Example 1 = | Note: the meaning of the labels can be found in $FREESURFER_HOME/FreeSurferColorLUT.txt = Examples = == Example 1 == |
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| description | |
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| = Example 2 = | == Example 2 == |
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| description | = Bugs = none |
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| ["othercommand1"], ["othercommand2"] | ?? |
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| description description |
?? |
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Index
Contents
Name
mri_tessellate - creates surface by tessellating given input volume
Synopsis
mri_tessellate [options] <invol> <labelvalue> <outsurf>
Arguments
Positional Arguments
<invol> |
input volume |
<labelvalue> |
integer, if input is filled volume, 127 is rh, 255 is lh |
<outsurf> |
binary surface of the tessellation |
Required Flagged Arguments
none
Optional Flagged Arguments
-a |
tessellate the surface of all voxels with different labels |
-n |
save surface with real RAS coordinates where c_(r,a,s) != 0 |
Outputs
<outsurf> |
surface file, typically ?h.orig |
Description
Note: the meaning of the labels can be found in $FREESURFER_HOME/FreeSurferColorLUT.txt
Examples
Example 1
mri_tessellate $SUBJECTS_DIR/subjid/mri/filled 127 rh.orig
Example 2
mri_tessellate $SUBJECTS_DIR/subjid/mri/aseg 17 lh.hippocampus
Bugs
none
See Also
??
Links
Methods Description
??
References
??
Reporting Bugs
Report bugs to <analysis-bugs@nmr.mgh.harvard.edu>