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'''Index''' [[TableOfContents]] |
'''Index''' <<TableOfContents>> |
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= Description = This program positions the tessellation of the cortical surface at the white matter surface, then the gray matter surface and generate surface files for these surfaces as well as a 'curvature' file for the cortical thickness, and a surface file which approximates layer IV of the cortical sheet. |
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| || Subject Name || || || || Hemisphere || r(right) or l(left) brain hemisphere || || |
||Subject Name || || || ||Hemisphere ||r(right) or l(left) brain hemisphere || || |
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| || -flag1 ?? || brief description || || || -flag2 ?? || brief description || || |
None |
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| || -q || Omit self-intersection and only generate gray/white surface || || || -c || Create curvature and area files from white matter surface || || || -a <avgs> || Average curvature values <avgs> times (default=10) || || || -whiteonly || Only generate white matter surface || || = Outputs = || ?? || description || || ?? || description || = Description = This program positions the tessellation of the cortical surface at the white matter surface, then the gray matter surface and generate surface files for these surfaces as well as a 'curvature' file for the cortical thickness, and a surface file which approximates layer IV of the cortical sheet. |
||-q ||Omit self-intersection and only generate gray/white surface || ||-c ||Create curvature and area files from white matter surface || ||-a <avgs> ||Average curvature values <avgs> times (default=10) || ||-whiteonly ||Only generate white matter surface || ||-orig_white <surf> ||specify a white surface to start with || ||-orig_pial <surf> ||specify a white surface to start with || ||-w <value> ||unknown || ||-max_gray_scale mgs || in white deformation set outside_hi = (max_border_white + mgs*max_gray) / (mgs+1.0) || ||-first_wm_peak || settle WM surface at first peak in intensity profile instead of highest || ||-pa <avgs> || average pial curvature values a max of <avgs> times. Default is 16. || |
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| = Bugs = None |
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| ["othercommand1"], ["othercommand2"] | [[othercommand1]], [[othercommand2]] |
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| = Methods Description = {{{ N/A }}} = References = ["References/Lastname###"] |
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| Report bugs to <analysis-bugs@nmr.mgh.harvard.edu> | Report bugs to < analysis-bugs@nmr.mgh.harvard.edu > |
Index
Contents
Name
mris_make_surfaces - Generates surface files for cortical and white matter surfaces, curvature file for cortical thickness and surface file estimate for layer IV of cortical sheet
Description
This program positions the tessellation of the cortical surface at the white matter surface, then the gray matter surface and generate surface files for these surfaces as well as a 'curvature' file for the cortical thickness, and a surface file which approximates layer IV of the cortical sheet.
Synopsis
mris_make_surfaces [options] <subject name> <hemisphere>
Arguments
Positional Arguments
Subject Name |
|
|
Hemisphere |
r(right) or l(left) brain hemisphere |
|
Required Flagged Arguments
None
Optional Flagged Arguments
-q |
Omit self-intersection and only generate gray/white surface |
-c |
Create curvature and area files from white matter surface |
-a <avgs> |
Average curvature values <avgs> times (default=10) |
-whiteonly |
Only generate white matter surface |
-orig_white <surf> |
specify a white surface to start with |
-orig_pial <surf> |
specify a white surface to start with |
-w <value> |
unknown |
-max_gray_scale mgs |
in white deformation set outside_hi = (max_border_white + mgs*max_gray) / (mgs+1.0) |
-first_wm_peak |
settle WM surface at first peak in intensity profile instead of highest |
-pa <avgs> |
average pial curvature values a max of <avgs> times. Default is 16. |
Examples
Example 1
Command:
Description:
Example 2
Command:
Description:
See Also
Links
Reporting Bugs
Report bugs to < analysis-bugs@nmr.mgh.harvard.edu >